Salmonella species SSDFZ54 |
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Putative Salmonella species SSDFZ54 RM systems
Ref: Tang,B. et al. unpublished
REBASE ref # 28107
| Sequence length: | GenBank #: | |
| Chromosome: | 4,876,986 bp | CP034819 |
| plasmid pTB501: | 188,527 bp | CP034820 |
| plasmid pTB502: | 146,389 bp | CP034821 |
REBASE acronym: SspZ54
Org_num: 33195
All begin EOS97_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5005 | 540 aa hypothetical protein | |||
| 5010 | S | S.SflN101ORF12740P (100% identity) | TGANNNNNNCTTC | S.SspZ54ORF5015P |
| 5015 | M | M.SflN101ORF12740P (100% identity) | TGANNNNNNCTTC | M.SspZ54ORF5015P |
| 5020 | R | SflN101ORF12740P (100% identity) | TGANNNNNNCTTC | SspZ54ORF5015P |
| 5025 | 65 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6035 | replication endonuclease | |||
| 6040 | M | M.Sensp14154ORF3155P (100% identity) | M.SspZ54ORF6040P | |
| 6045 | DUF3850 domain-containing protein | |||
| 6260 | replication endonuclease | |||
| 6265 | M | M.Sensp14076ORF3345P (100% identity) | M.SspZ54ORF6265P | |
| 6270 | TraR/DksA family transcriptional regulator | |||
| 7280 | DNA-binding transcriptional regulator Fis | |||
| 7285 | M | M.StyUK1III (100% identity) | ATGCAT | M.SspZ54ORF7285P |
| 7290 | DUF2556 domain-containing protein | |||
| 7770 | ribulose-phosphate 3-epimerase | |||
| 7775 | M | M.StyTDamP (100% identity) | GATC | M.SspZ54DamP |
| 7780 | cell division protein DamX | |||
| 13045 | DNA primase | |||
| 13050 | R | SenS0991ORF3295P (100% identity) | SspZ54ORF13050P | |
| 13055 | YebC/PmpR family DNA-binding transcriptional | |||
| 19205 | phosphohydrolase | |||
| 19210 | M | M.SspA292Dcm2P (100% identity) | CCWGG | M.SspZ54DcmP |
| 19215 | V | V.StyUK1DcmP (100% identity) | V.SspZ54DcmP | |
| 19220 | drug/metabolite exporter YedA | |||
| plasmid pTB501 | ||||
| 24980 | 284 aa hypothetical protein | |||
| 24985 | M | M.YpsF1ORFDP (100% identity) | M.SspZ54ORF24985P | |
| 24990 | DNA-binding protein | |||
| 25100 | 202 aa hypothetical protein | |||
| 25105 | M | M.YpsF1ORFBP (100% identity) | M.SspZ54ORF25105P | |
| 25110 | 108 aa hypothetical protein | |||
| 25435 | thermonuclease family protein | |||
| 25440 | M | M.YpsF1ORFCP (100% identity) | M.SspZ54ORF25440P | |
| 25445 | DUF1173 family protein | |||
| plasmid pTB502 | ||||
| 25730 | 0 aa hypothetical protein | |||
| 25735 | M | M.Sensp14146ORF23435P (99% identity) | M.SspZ54ORF25735P | |
| 25740 | recombination-associated protein RdgC | |||
| 25950 | 0 aa hypothetical protein | |||
| 25955 | M | M.SenMCS11ORFFP (100% identity) | M.SspZ54ORF25955P | |
| 25960 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15420 | MFS transporter | |||
| 15425 | M | M.SenWT5II (100% identity) | CAGAG | M.SspZ54ORF15425P |
| 15430 | R | StyUK1IP (99% identity) | CAGAG | SspZ54ORF15425P |
| 15435 | 33 aa hypothetical protein | |||