Escherichia coli C4435 |
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Putative Escherichia coli C4435 RM systems
Ref: Barrios-Villa,E. et al. unpublished
REBASE ref # 28059
Complete sequence: 5,199,428 bp
GenBank #: CP027851
REBASE acronym: EcoC4435
Org_num: 32972
All begin C7H11_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22750 | 61 aa hypothetical protein | |||
| 22755 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC4435ORF22760P |
| 22760 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC4435ORF22760P |
| 22765 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC4435ORF22760P |
| 22770 | 267 aa hypothetical protein | |||
| 26835 | restriction endonuclease | |||
| 26840 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoC4435ORF26840P |
| 26845 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoC4435ORF26840P |
| 26850 | R | type I restriction endonuclease | RTACNNNNGTG | EcoC4435ORF26840P |
| 26855 | 117 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1725 | Fis family transcriptional regulator | |||
| 1730 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC4435ORF1730P |
| 1735 | DUF2556 domain-containing protein | |||
| 2100 | pseudogene | |||
| 2105 | R | Sso8033ORF3755P (99% identity) | EcoC4435ORF2110P | |
| 2110 | M | M.Sso8033ORF3755P (100% identity) | M.EcoC4435ORF2110P | |
| 2115 | 257 aa hypothetical protein | |||
| 3345 | 476 aa hypothetical protein | |||
| 3350 | M | M.SflJ17BORF23540P (42% identity) | M.EcoC4435ORF3350P | |
| 3355 | integrase | |||
| 3995 | antitermination protein | |||
| 4000 | M | M2.EcosS3ORF2905P (100% identity) | M.EcoC4435ORF4000P | |
| 4005 | R | R2.EcosS3ORF2905P (100% identity) | EcoC4435ORF4000P | |
| 4010 | DUF262 domain-containing protein | |||
| 5980 | PerC family transcriptional regulator | |||
| 5985 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoC4435ORF5985P |
| 5990 | LexA family transcriptional regulator | |||
| 6025 | 67 aa hypothetical protein | |||
| 6030 | M | M.EcosR6ORF7985P (100% identity) | M.EcoC4435ORF6030P | |
| 6035 | lysis protein S | |||
| 6150 | 256 aa hypothetical protein | |||
| 6155 | M | DNA adenine methylase | M.EcoC4435ORF6155P | |
| 6170 | 108 aa hypothetical protein | |||
| 8275 | chromosome partitioning protein ParA | |||
| 8280 | R | Ecop4AORF21650BP (100% identity) | GGTCTC | EcoC4435ORF8285P |
| 8285 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC4435ORF8285P |
| 8290 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoC4435ORF8285P |
| 8295 | IS3 family transposase | |||
| 10680 | ATP-binding protein | |||
| 10685 | M | M.EcosS3ORF15775P (100% identity) | M.EcoC4435ORF10685P | |
| 10690 | 81 aa hypothetical protein | |||
| 13040 | ribulose-phosphate 3-epimerase | |||
| 13045 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC4435DamP |
| 13050 | cell division protein DamX | |||
| 13385 | drug/metabolite exporter YedA | |||
| 13390 | V | V.SflC32DcmP (74% identity) | V.EcoC4435DcmP | |
| 13395 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC4435DcmP |
| 13400 | phosphohydrolase | |||
| 19985 | 71 aa hypothetical protein | |||
| 19990 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC4435ORF19990P | |
| 19995 | XRE family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| ??? | R | EcoU15AMcrCP (100% identity) | EcoC4435McrCP | |
| 15 | R | EcosS3McrBP (100% identity) | EcoC4435McrBP | |
| 20 | 60 aa hypothetical protein | |||