Vibrio cholerae 60555434 |
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Putative Vibrio cholerae 60555434 RM systems
Ref: Perez Chaparro,P.J. et al. J. Microbiol. Methods 87 (2), 208-212 (2011)
REBASE ref # 28012
Contig set: 3,918,371 bp
GenBank #: QKWT00000000 (NZ_QKWT00000000)
REBASE acronym: Vch5434
Org_num: 32903
All begin DOE54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15690 | TIGR02584 family CRISPR-associated protein | |||
| 15695 | R | VchVC48ORF14325P (99% identity) | Vch5434ORF15695P | |
| 15700 | VWA domain-containing protein | |||
| 15730 | 609 aa hypothetical protein | |||
| 15735 | M | M.Gho107881ORFAP (94% identity) | M.Vch5434ORF15735P | |
| 15740 | S | S.Ple25521ORFGP (61% identity) | S.Vch5434ORF15735P | |
| 15745 | AAA family ATPase | |||
| 12510 | chromosome segregation protein SMC | |||
| 12515 | S | S.Vsp1176ORF8840P (97% identity) | S.Vch5434ORF12520P | |
| 12520 | M | M.Vsp1176ORF8840P (98% identity) | M.Vch5434ORF12520P | |
| 12525 | R | Vch1071ORF1944P (99% identity) | Vch5434ORF12520P | |
| 12530 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12660 | ribulose-phosphate 3-epimerase | |||
| 12665 | M | M.VchM66DamP (96% identity) | GATC | M.Vch5434DamP |
| 12670 | cell division protein DamX | |||
| 1030 | site-specific integrase | |||
| 1035 | R | Vpas10329ORF1860P (99% identity) | Vch5434ORF1035P | |
| 1040 | DNA (cytosine-5-)-methyltransferase | |||
| 1035 | TIGR02391 family protein | |||
| 1040 | M | M.Vpas10329ORF1865P (100% identity) | M.Vch5434ORF1040P | |
| 1045 | 157 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15740 | type I restriction endonuclease subunit S | |||
| 15745 | R | Sxi8M34McrBP (49% identity) | Vch5434McrBP | |
| 15750 | R | VchSP7GMcrCP (97% identity) | Vch5434McrCP | |
| 15755 | hemolysin | |||
| 12525 | type I restriction-modification system | |||
| 12530 | R | Vch1071MrrP (100% identity) | Vch5434MrrP | |
| 12535 | 538 aa hypothetical protein | |||