Escherichia coli B8S56 |
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Putative Escherichia coli B8S56 RM systems
Ref: Xu,A. et al. unpublished
REBASE ref # 27919
Contig set: 5,684,103 bp
GenBank #: QEMT00000000 (NZ_QEMT00000000)
REBASE acronym: EcoB8S56
Org_num: 32776
All begin DD762_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 27280 | M | M.EcoNT1N28ORFCP (100% identity) | M.EcoB8S56ORF27280P | |
| 27285 | S | S.EcoB7S3ORF26735P (100% identity) | S.EcoB8S56ORF27280P | |
| 27290 | DUF4268 domain-containing protein | |||
| 27295 | R | EcoB7S3ORF26735P (100% identity) | EcoB8S56ORF27280P | |
| 27300 | ATP-binding protein | |||
| 25930 | 65 aa hypothetical protein | |||
| 25935 | R | EcoPSUO78ORF23890P (100% identity) | TGANNNNNNCTTC | EcoB8S56ORF25940P |
| 25940 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoB8S56ORF25940P |
| 25945 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoB8S56ORF25940P |
| 25950 | 0 aa hypothetical protein | |||
| 10525 | endoribonuclease SymE | |||
| ??? | S | S.EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | S.EcoB8S56ORF10540P |
| 10540 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.EcoB8S56ORF10540P |
| 10545 | R | EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | EcoB8S56ORF10540P |
| 10550 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 28795 | TrmB family transcriptional regulator | |||
| 28800 | M | M.EcoB7S3ORF29115P (100% identity) | M.EcoB8S56ORF28800P | |
| 28805 | holin | |||
| 25480 | integrase | |||
| 25485 | R | SflFF24DptFP (100% identity) | EcoB8S56DptFP | |
| 25490 | DNA phosphorothioation-dependent restriction | |||
| 25485 | DNA phosphorothioation-dependent restriction | |||
| 25490 | R | SflFF24DptGP (100% identity) | EcoB8S56DptGP | |
| 25495 | DNA phosphorothioation-dependent restriction | |||
| 25490 | DNA phosphorothioation-dependent restriction | |||
| 25495 | R | EcosEC5DptHP (100% identity) | EcoB8S56DptHP | |
| 25500 | 172 aa hypothetical protein | |||
| 12760 | DUF2556 domain-containing protein | |||
| 12765 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.EcoB8S56ORF12765P |
| 12770 | Fis family transcriptional regulator | |||
| 25510 | DGQHR domain-containing protein | |||
| 25515 | M | M.SflFF24DndEP (100% identity) | M.EcoB8S56DndEP | |
| 25520 | DNA sulfur modification protein DndD | |||
| 25515 | DNA sulfur modification protein DndE | |||
| 25520 | M | M.SflFF24DndDP (100% identity) | M.EcoB8S56DndDP | |
| 25525 | DNA phosphorothioation system sulfurtransferase | |||
| 25520 | DNA sulfur modification protein DndD | |||
| 25525 | M | M.SflFF24DndCP (100% identity) | M.EcoB8S56DndCP | |
| 25530 | DNA sulfur modification protein DndB | |||
| 25525 | DNA phosphorothioation system sulfurtransferase | |||
| 25530 | M | M.SflFF24DndBP (100% identity) | M.EcoB8S56DndBP | |
| 25535 | osmoprotectant transport activator ProQ | |||
| 23225 | plasmid maintenance protein CcdB | |||
| 23230 | M | M.SenH18ORF28321P (100% identity) | M.EcoB8S56ORF23230P | |
| 23235 | DUF262 domain-containing protein | |||
| 23230 | DNA methyltransferase | |||
| 23235 | R | EcoUM1886ORF4655P (100% identity) | EcoB8S56ORF23235P | |
| 23240 | type B 50S ribosomal protein L31 | |||
| 21470 | drug/metabolite exporter YedA | |||
| 21475 | V | V.EcosE1DcmP (74% identity) | V.EcoB8S56DcmP | |
| 21480 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.EcoB8S56DcmP |
| 21485 | phosphohydrolase | |||
| 19375 | LexA family transcriptional regulator | |||
| 19380 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoB8S56ORF19380P |
| 19385 | helix-turn-helix domain-containing protein | |||
| 11355 | recombination-associated protein RdgC | |||
| 11360 | M | M.Sen94620ORF28085P (100% identity) | M.EcoB8S56ORF11360P | |
| 11375 | 61 aa hypothetical protein | |||
| 12015 | ribulose-phosphate 3-epimerase | |||
| 12020 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoB8S56DamP |
| 12025 | cell division protein DamX | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 23135 | IS3 family transposase | |||
| 23140 | M | M.SenH18ORF28191P (100% identity) | M.EcoB8S56ORF23140P | |
| 23145 | R | EcoUM1886ORF4740P (100% identity) | EcoB8S56ORF23140P | |
| 23150 | DUF1281 domain-containing protein | |||