Campylobacter upsaliensis NCTC11541 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Campylobacter upsaliensis NCTC11541 RM systems
Ref:
REBASE ref # 22501
Complete sequence: 1,671,550 bp
GenBank #: LR134372
REBASE acronym: Cup11541
Org_num: 32463
All begin NCTC11541_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 313 | glucose inhibited division protein B | |||
| ??? | R | HciP01DORFHP (87% identity) | Cup11541ORF316P | |
| 316 | M | M.HbiAAQJHORF8670P (91% identity) | M.Cup11541ORF316P | |
| 317 | S | S.Cup14913ORF294P (76% identity) | S.Cup11541ORF316P | |
| 318 | tRNA | |||
| 802 | Sec-independent protein translocase protein | |||
| 803 | S | Cup3940ORF767P (22% identity) | S1.Cup11541ORF803P | |
| 804 | S | S.Cup14913ORF785P (30% identity) | S2.Cup11541ORF803P | |
| 805 | Undecaprenyl diphosphate synthase | |||
| 1104 | UDP-N-acetylmuramate--L-alanine ligase | |||
| 1105 | R | Che9613ORF3135P (94% identity) | Cup11541ORF1107P | |
| 1106 | S | S.Che9613ORF3135P (67% identity) | S.Cup11541ORF1107P | |
| 1107 | M | M.Che9613ORF3135P (96% identity) | M.Cup11541ORF1107P | |
| 1109 | integral membrane protein | |||
| 1172 | Menaquinone via futalosine step 3 | |||
| 1173 | S | S.Hsp6242ORF2455P (37% identity) | S.Cup11541ORF1174P | |
| 1174 | M | M.Hsp6242ORF2455P (77% identity) | M.Cup11541ORF1174P | |
| 1175 | pyridoxamine 5-phosphate oxidase | |||
| 1650 | translocation protein TolB | |||
| 1651 | M | M.Cup11840ORF1616P (92% identity) | M.Cup11541ORF1651P | |
| 1652 | R | Cup11840ORF1616P (95% identity) | Cup11541ORF1651P | |
| 1653 | S | S1.Cup197059ORF1587P (53% identity) | S.Cup11541ORF1651P | |
| 1654 | periplasmic protein TonB | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 379 | Thioredoxin | |||
| 380 | R | Cup197059ORF387P (98% identity) | Cup11541ORF381P | |
| 381 | M | M.Cup197059ORF387P (98% identity) | M.Cup11541ORF381P | |
| 382 | Crp/Fnr family transcriptional regulator | |||
| 575 | Protein export cytoplasm protein SecA ATPase RNA | |||
| 576 | RM | Che9613ORF9260P (72% identity) | Cup11541ORF576P | |
| 577 | S | S.Che9613ORF9260P (43% identity) | S.Cup11541ORF576P | |
| 578 | permease | |||
| 637 | succinyl-diaminopimelate desuccinylase | |||
| 638 | RM | Cup3940ORF610P (99% identity) | Cup11541ORF638P | |
| 639 | Sulfur carrier protein ThiS | |||
| 753 | membrane protein | |||
| 754 | R | Che9613ORF2625P (97% identity) | Cup11541ORF755P | |
| 755 | M | M.Hci12221IV (96% identity) | M.Cup11541ORF755P | |
| 756 | Phosphate ABC transporter, periplasmic | |||
| 801 | Uncharacterised protein | |||
| 802 | RM | Csp25113ORF876P (63% identity) | Cup11541ORF802P | |
| 803 | Restriction enzyme BgcI subunit beta | |||
| 985 | Ribbon-helix-helix protein, copG family | |||
| 986 | RM | Hwi7711ORF7925P (68% identity) | Cup11541ORF986P | |
| 987 | Glycerophosphoryl diester phosphodiesterase | |||
| 1068 | Uncharacterised protein | |||
| 1069 | M | M.Csp25113ORF614P (95% identity) | ACNGT | M.Cup11541III |
| ??? | R | Cup11840VIP (89% identity) | ACNGT | Cup11541IIIP |
| 1072 | Chorismate mutase I / Prephenate dehydratase | |||
| 1426 | Imidazole glycerol phosphate synthase | |||
| 1427 | M | M.Csp6879ORF3090P (78% identity) | GANTC | M.Cup11541II |
| 1428 | R | Csp6879ORF3090P (80% identity) | GANTC | Cup11541IIP |
| 1429 | imidazole glycerol-phosphate | |||
| 1703 | N-acetyl-gamma-glutamyl-phosphate reductase | |||
| 1704 | M | M.Cup6824ORF7900P (98% identity) | RAATTY | M.Cup11541I |
| 1705 | R | Cup12264ORF1828P (99% identity) | RAATTY | Cup11541IP |
| 1706 | Translation initiation factor 3 | |||
| 1716 | Uncharacterised protein | |||
| 1717 | M | M.Cup6824ORF7945P (83% identity) | M.Cup11541ORF1717P | |
| 1718 | Uncharacterised protein | |||
| 1719 | Glutamate synthase [NADPH] large chain | |||
| 1720 | M | M.Cup3940ORF1640P (95% identity) | M.Cup11541ORF1720P | |
| 1721 | R | Cup3940ORF1640P (98% identity) | Cup11541ORF1720P | |
| 1722 | Glutamate synthase [NADPH] small chain | |||
| 1724 | ribosomal pseudouridine synthase | |||
| 1725 | M | M.Hbi43879ORF490P (95% identity) | GCATC | M1.Cup11541IV |
| 1726 | M | M.Che9613ORF6915P (93% identity) | GCATC | M2.Cup11541IV |
| ??? | R | Hmu12714IIP (76% identity) | GCATC | Cup11541IVP |
| 1729 | Holliday junction resolvase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 548 | Uncharacterised protein | |||
| 549 | M | M.HciP01DORFB1P (65% identity) | M.Cup11541ORF549P | |
| 550 | Uncharacterised protein | |||
| 551 | Virulence protein | |||
| 552 | R | HciORF61P (65% identity) | Cup11541ORF549P | |
| 553 | Lipid-A-disaccharide synthase; CAzY | |||