Helicobacter pylori KH44 |
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Putative Helicobacter pylori KH44 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
GenBank #: PHLI00000000
REBASE acronym: HpyKH44
Org_num: 32298
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyKH44ORFMP (52% identity) | S.HpyKH44ORFNP | |
| ??? | R | HpyMA02XIVP (96% identity) | HpyKH44ORFNP | |
| 6 | hydroxyethylthiazole kinase | |||
| 1 | S | S.HpyC122ORF870P (95% identity) | S.HpyKH44ORFZP | |
| 2 | M | M.HpyYN483ORFHP (93% identity) | M.HpyKH44ORFZP | |
| 4 | R | HpyKH2ORFFP (94% identity) | HpyKH44ORFZP | |
| 6 | M48 family peptidase | |||
| 1 | S | S.HpySW32III (97% identity) | S.HpyKH44ORFA1P | |
| 2 | M | N-6 DNA methylase, partial | M.HpyKH44ORFA1P | |
| ??? | R | HpyF007ORF2325P (91% identity) | HpyKH44ORFA1P | |
| 6 | 631 aa hypothetical protein U063_1207 | |||
| 36 | phosphatase PAP2 family protein | |||
| 37 | M | M.HpyKH45ORFYP (88% identity) | M.HpyKH44ORFYP | |
| 38 | 60 aa hypothetical protein | |||
| 90 | cadmium-translocating P-type ATPase | |||
| 93 | S | S.HpyKH45ORFRP (96% identity) | S.HpyKH44ORFMP | |
| 94 | outer membrane beta-barrel protein HofF | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4 | catalase family peroxidase | |||
| 5 | M | M.HpyF020ORF2290P (97% identity) | M.HpyKH44ORFB1P | |
| 6 | GIY-YIG nuclease family protein | |||
| 5 | DNA cytosine methyltransferase | |||
| 6 | R | GIY-YIG nuclease family protein | ACNGT | HpyKH44ORFC1P |
| 8 | M | M.HpySG33II (97% identity) | ACNGT | M.HpyKH44ORFC1P |
| 9 | translational GTPase TypA | |||
| 4 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 5 | M | M.HpySW05XI (95% identity) | M.HpyKH44ORFIP | |
| 6 | 62 aa hypothetical protein | |||
| 11 | S41 family peptidase | |||
| 12 | R | HpyMM05VP (96% identity) | GANTC | HpyKH44ORFWP |
| 13 | M | M.HpyKH17ORFKP (99% identity) | GANTC | M.HpyKH44ORFWP |
| 14 | adenine specific DNA methyltransferase 2 domain protein | |||
| 11 | modification methylase VspI domain protein | |||
| ??? | M | M.HpyISR3III (96% identity) | M.HpyKH44ORFD1P | |
| 15 | adenine specific DNA methyltransferase | |||
| ??? | RM | HpyFD430ORFUP (89% identity) | HpyKH44ORFXP | |
| 18 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 20 | DNA topoisomerase subunit B | |||
| 22 | M | M.HpyKH10ORFKP (95% identity) | M.HpyKH44ORFFP | |
| 23 | R | HpyKH36ORFDP (96% identity) | HpyKH44ORFFP | |
| 24 | metalloendopeptidase like protein | |||
| 24 | 95 aa hypothetical protein | |||
| 25 | RM | HpyUM114ORF435P (93% identity) | HpyKH44ORFRP | |
| 27 | DUF4065 domain-containing protein | |||
| 20 | ATP-dependent helicase | |||
| 22 | M | M.HpyKH39ORFMP (96% identity) | GTNNAC | M.HpyKH44ORFHP |
| 23 | R | HpyMA17XIIP (99% identity) | GTNNAC | HpyKH44ORFHP |
| 24 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 29 | DNA-binding response regulator | |||
| ??? | R | Hpyfe75ORF7255P (94% identity) | HpyKH44ORFUP | |
| 33 | M | site-specific DNA-methyltransferase | M1.HpyKH44ORFUP | |
| 34 | M | M1.HpyOK311ORFRP (98% identity) | GAAGA | M2.HpyKH44ORFUP |
| 35 | site-specific DNA-methyltransferase | |||
| 39 | Laminin subunit alpha-2 precursor | |||
| 41 | R | HpyMM06XP (99% identity) | TCNNGA | HpyKH44ORFEP |
| 42 | M | M.HpyKH31ORFJP (98% identity) | TCNNGA | M.HpyKH44ORFEP |
| 43 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 48 | serine acetyltransferase | |||
| 50 | R | HpyKH3ORFSP (92% identity) | HpyKH44ORFTP | |
| 55 | M | M.HpyMM04I (96% identity) | M.HpyKH44ORFTP | |
| 56 | HAD family hydrolase | |||
| 48 | outer membrane protein | |||
| ??? | R | HpyU422IVP (96% identity) | CCATC | HpyKH44ORFPP |
| 52 | M | M1.HpySP503III (93% identity) | CCATC | M1.HpyKH44ORFPP |
| 53 | M | M2.HpyP105III (98% identity) | CCATC | M2.HpyKH44ORFPP |
| 54 | YjgP/YjgQ family permease | |||
| 74 | outer membrane protein | |||
| ??? | RM | HpyFD662ORF2380P (86% identity) | HpyKH44ORFSP | |
| 79 | -binding protein | |||
| 93 | ComF family protein | |||
| 94 | RM | HpyT001ORF7155P (95% identity) | HpyKH44ORFOP | |
| 95 | S | S.HpyFD535ORFI1P (95% identity) | S.HpyKH44ORFOP | |
| 96 | DNA polymerase I | |||
| 148 | alpha-1,2-fucosyltransferase | |||
| 149 | M | M.HpyI016VII (96% identity) | GATC | M.HpyKH44ORFDP |
| 151 | 337 aa hypothetical protein | |||
| 168 | 30S ribosomal protein S12 methylthiotransferase RimO | |||
| 169 | M | M2.HpyKG9ORF3535P (98% identity) | M1.HpyKH44ORFLP | |
| 170 | M | M1.HpyPU007ORF3405P (92% identity) | M2.HpyKH44ORFLP | |
| ??? | R | HpyME46ORF3490P (92% identity) | HpyKH44ORFLP | |
| 174 | 74 aa hypothetical protein HMPREF1403_01624 | |||
| 159 | uncharacterized protein | |||
| 160 | M | M.HpyKH39ORFEP (99% identity) | CTNAG | M.HpyKH44ORFAP |
| 161 | R | HpyKH15ORFAP (97% identity) | CTNAG | HpyKH44ORFAP |
| 162 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 220 | sodium/proline symporter | |||
| 221 | M | M.HpyGRE046V (98% identity) | CCTTC | M.HpyKH44ORFJP |
| 222 | R | HpyU311VIP (97% identity) | CCTTC | HpyKH44ORFJP |
| 223 | restriction endonuclease | |||
| 222 | 420 aa hypothetical protein | |||
| 223 | R | HpyGE19IVP (89% identity) | CCTC | HpyKH44ORFKP |
| 224 | DNA methyltransferase | |||
| 225 | M | M2.HpyKG4VIP (99% identity) | CCTC | M2.HpyKH44ORFKP |
| 227 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 236 | chaperone protein ClpB | |||
| 239 | M | M.HpyKH40ORFBP (99% identity) | CCGG | M.HpyKH44ORFBP |
| 240 | R | HpyKH16ORFOP (98% identity) | CCGG | HpyKH44ORFBP |
| 241 | DNA -methyltransferase | |||
| 240 | endonuclease MjaVIP | |||
| 241 | M | M.HpyMM01ORF1255P (86% identity) | M.HpyKH44ORFCP | |
| 242 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyKH26ORFMP (96% identity) | M.HpyKH44ORFQP | |
| 21 | R | Hpy2099ORF7615P (95% identity) | HpyKH44ORFQP | |
| 24 | 95 aa hypothetical protein | |||
| 34 | DUF1887 family protein | |||
| 35 | M | M.Hpyfe78ORF7135P (94% identity) | M.HpyKH44ORFVP | |
| 36 | R | HpyFD703ORF7960P (94% identity) | HpyKH44ORFVP | |
| 38 | 66 aa hypothetical protein | |||
| 54 | DNA/RNA non-specific endonuclease | |||
| 55 | M | M.HpyMM02ORF6480P (95% identity) | M.HpyKH44ORFGP | |
| 56 | R | HpyKH34ORFKP (92% identity) | HpyKH44ORFGP | |
| 57 | biotin synthase | |||