Helicobacter pylori KH43 |
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Putative Helicobacter pylori KH43 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,627,102 bp
GenBank #: PHLJ00000000 (NZ_PHLJ00000000)
REBASE acronym: HpyKH43
Org_num: 32297
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyCOL308ORF4135P (84% identity) | M.HpyKH43ORFA1P | |
| 4 | phosphatase PAP2 family protein | |||
| 73 | HsdR family type I site-specific deoxyribonuclease | |||
| ??? | M | M.HpyMM01ORF7395P (94% identity) | M.HpyKH43ORFRP | |
| 77 | S | S.HpyKG6ORF6910P (98% identity) | S.HpyKH43ORFRP | |
| 78 | glutamine--fructose-6-phosphate transaminase | |||
| 88 | outer membrane beta-barrel protein HofF | |||
| 90 | S | S.HpyGT7ORF4080P (95% identity) | S.HpyKH43ORFMP | |
| 91 | cadmium-translocating P-type ATPase | |||
| 176 | hydroxyethylthiazole kinase | |||
| 177 | R | HpyKH17ORFD1P (96% identity) | HpyKH43ORFLP | |
| 180 | S | S.HpySG18V (94% identity) | S.HpyKH43ORFLP | |
| 417 | polyphosphate kinase 1 | |||
| 418 | S | S.HpyUM067ORF2910P (96% identity) | S.HpyKH43ORFJP | |
| 419 | M | M.HpyUM084ORF1645P (96% identity) | M.HpyKH43ORFJP | |
| ??? | R | HpyKH22ORFEP (92% identity) | HpyKH43ORFJP | |
| 422 | 631 aa hypothetical protein U063_1207 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4 | ATP-dependent helicase | |||
| 5 | M | M.HpyBS21ORF2860P (91% identity) | GTNNAC | M.HpyKH43ORFIP |
| 6 | R | HpyFD703ORF3775P (97% identity) | GTNNAC | HpyKH43ORFIP |
| 7 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 6 | 76 aa hypothetical protein SE87_02515 | |||
| 7 | R | 179 aa hypothetical protein | ACGT | HpyKH43ORFB1P |
| 8 | M | M.Hpy2099ORF2395P (98% identity) | ACGT | M.HpyKH43ORFB1P |
| 9 | GIY-YIG nuclease family protein | |||
| 8 | DNA cytosine methyltransferase | |||
| 9 | R | GIY-YIG nuclease family protein | HpyKH43ORFC1P | |
| 11 | M | M.HpyKH32ORFA1P (98% identity) | M.HpyKH43ORFC1P | |
| 13 | 108 aa hypothetical protein | |||
| 11 | S41 family peptidase | |||
| 12 | R | HpyKH17ORFKP (98% identity) | GANTC | HpyKH43ORFYP |
| 13 | M | M.HpyNP13VII (98% identity) | GANTC | M.HpyKH43ORFYP |
| 14 | adenine specific DNA methyltransferase | |||
| 13 | site-specific DNA-methyltransferase | |||
| 14 | RM | adenine specific DNA methyltransferase | HpyKH43ORFZBP | |
| 15 | RM | HpyKH39ORFWAP (93% identity) | HpyKH43ORFZAP | |
| 16 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 16 | modification methylase VspI domain protein | |||
| 17 | M | M.HpyFD703ORF4855P (98% identity) | ATTAAT | M.HpyKH43ORFD1P |
| 27 | DNA-binding response regulator | |||
| 28 | R | HpyMA04IVP (97% identity) | GAAGA | HpyKH43ORFWP |
| 29 | M | M1.HpyUM067ORF7220P (98% identity) | GAAGA | M1.HpyKH43ORFWP |
| 30 | M | M2.HpyG008III (94% identity) | GAAGA | M2.HpyKH43ORFWP |
| 31 | site-specific DNA-methyltransferase | |||
| 44 | HAD family hydrolase | |||
| 45 | M | M.HpyMM01I (97% identity) | CATG | M.HpyKH43ORFUP |
| ??? | R | HpyKH11ORFLP (83% identity) | CATG | HpyKH43ORFUP |
| 51 | serine acetyltransferase | |||
| 55 | DNA polymerase I | |||
| 56 | S | S.HpyKH4ORFVP (45% identity) | S2.HpyKH43ORFTP | |
| 57 | S | S1.HpyMA19ORF6905P (94% identity) | S1.HpyKH43ORFTP | |
| 58 | RM | HpyUM067ORF4405P (96% identity) | HpyKH43ORFTP | |
| 59 | ComF family protein | |||
| 34 | alpha-1,2-fucosyltransferase | |||
| 36 | M | M.HpyKH14ORFCP (97% identity) | M.HpyKH43ORFEP | |
| 38 | 313 aa hypothetical protein | |||
| 57 | 68 aa hypothetical protein | |||
| 58 | M | M.HpyID10X (98% identity) | TGCA | M.HpyKH43ORFQP |
| 59 | R | HpyMA16VP (98% identity) | TGCA | HpyKH43ORFQP |
| 62 | anthranilate synthase component I | |||
| 75 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 76 | M | M.HpyKH11ORFEP (99% identity) | TCNNGA | M.HpyKH43ORFAP |
| 77 | R | Hpy340ORF1515P (100% identity) | TCNNGA | HpyKH43ORFAP |
| 78 | Laminin subunit alpha-2 precursor | |||
| 97 | YjgP/YjgQ family permease | |||
| 98 | M | N6 adenine-specific DNA methyltransferase | M.HpyKH43ORFCP | |
| 99 | cag pathogenicity island protein Cagb | |||
| 85 | 103 aa hypothetical protein | |||
| ??? | RM | HpyMM04ORF3025P (62% identity) | HpyKH43ORFSP | |
| 89 | outer membrane protein | |||
| 101 | 95 aa hypothetical protein | |||
| 102 | RM | Hpy33CORF7110P (76% identity) | HpyKH43ORFPP | |
| 103 | transcription termination/antitermination protein NusA | |||
| 94 | DNA cytosine methyltransferase | |||
| ??? | R | HpyNAB47ORFIP (95% identity) | HpyKH43ORFKP | |
| 97 | DNA methyltransferase | |||
| 98 | M | M2.HpyUM023ORF1910P (98% identity) | CCTC | M2.HpyKH43ORFKP |
| 100 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 117 | 3'-5' exonuclease | |||
| 118 | M | M.HpyMA25ORF3330P (99% identity) | M.HpyKH43ORFDP | |
| 119 | R | HpyKH22ORFZP (100% identity) | HpyKH43ORFDP | |
| 120 | 3'-5' exonuclease | |||
| 122 | outer membrane protein | |||
| ??? | R | HpyKH37ORFHP (96% identity) | HpyKH43ORFNP | |
| ??? | M | M2.HpyKH11ORFPP (98% identity) | M1.HpyKH43ORFNP | |
| 128 | M | M2.HpyT022V (44% identity) | M2.HpyKH43ORFNP | |
| 129 | 85 aa hypothetical protein HPPN120_06945 | |||
| 123 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 124 | M | M.HpyG012XVII (97% identity) | GCGC | M.HpyKH43ORFBP |
| 125 | 62 aa hypothetical protein | |||
| 173 | exodeoxyribonuclease VII large subunit | |||
| 174 | M | M.HpyKH10ORFMP (83% identity) | M.HpyKH43ORFFP | |
| 175 | 215 aa hypothetical protein HMPREF1415_00409 | |||
| 174 | DNA -methyltransferase | |||
| 175 | R | Hpy199ORFAP (96% identity) | CCGG | HpyKH43ORFGP |
| 176 | M | M.HpyUM114ORF3995P (99% identity) | CCGG | M.HpyKH43ORFGP |
| 177 | chaperone protein ClpB | |||
| 248 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 249 | R | HpyUM084ORF1020P (100% identity) | CTNAG | HpyKH43ORFHP |
| 252 | M | M.HpySG13VI (100% identity) | CTNAG | M.HpyKH43ORFHP |
| 253 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | DUF1887 family protein | |||
| ??? | M | M.HpyIS5ORF390P (91% identity) | M.HpyKH43ORFXP | |
| 34 | R | HpyBG7ORF6855P (93% identity) | HpyKH43ORFXP | |
| 36 | 66 aa hypothetical protein | |||
| 54 | DNA/RNA non-specific endonuclease | |||
| 55 | M | M.HpyT017ORF6775P (94% identity) | M.HpyKH43ORFVP | |
| 56 | R | HpyKH22ORFYP (89% identity) | HpyKH43ORFVP | |
| 57 | biotin synthase | |||
| 93 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyP006ORF7010P (96% identity) | M.HpyKH43ORFOP | |
| ??? | R | HpyMA25ORF7305P (95% identity) | HpyKH43ORFOP | |
| 101 | 95 aa hypothetical protein | |||