Helicobacter pylori KH38 |
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Putative Helicobacter pylori KH38 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,623,079 bp
GenBank #: PHLN00000000 (NZ_PHLN00000000)
REBASE acronym: HpyKH38
Org_num: 32157
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyTW02V (98% identity) | S.HpyKH38ORFD1P | |
| 2 | cagY like protein | |||
| 1 | S | restriction endonuclease subunit S | S.HpyKH38ORFZP | |
| 2 | M | M.HpyBG7ORF2160P (96% identity) | M.HpyKH38ORFZP | |
| 3 | R | HpyCOL105XP (90% identity) | HpyKH38ORFZP | |
| 5 | 631 aa hypothetical protein U063_1207 | |||
| 2 | 61 aa hypothetical protein | |||
| ??? | R | HpyNP02XVP (94% identity) | HpyKH38ORFA1P | |
| 8 | S | restriction endonuclease subunit S | S1.HpyKH38ORFA1P | |
| 9 | S | restriction endonuclease subunit S | S2.HpyKH38ORFA1P | |
| 11 | S | S.HpySW21ORF2970P (53% identity) | S3.HpyKH38ORFA1P | |
| 14 | M | M.HpyU204XII (91% identity) | M.HpyKH38ORFA1P | |
| 15 | phosphatase PAP2 family protein | |||
| 102 | M48 family peptidase | |||
| 105 | R | HpyJO7XVP (95% identity) | HpyKH38ORFEP | |
| 106 | 64 aa hypothetical protein | |||
| 107 | M | M.HpyKH28ORFCP (92% identity) | M.HpyKH38ORFEP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | alpha-1,2-fucosyltransferase | |||
| 3 | M | M.HpyL009VIII (96% identity) | GATC | M.HpyKH38ORFNP |
| 4 | 268 aa hypothetical protein | |||
| 1 | 74 aa hypothetical protein | |||
| 2 | M | M2.HpyL008VIIP (97% identity) | M.HpyKH38ORFLP | |
| 3 | sodium/proline symporter | |||
| 1 | M | M.HpyPO01XVIII (99% identity) | M.HpyKH38ORFC1P | |
| 2 | HNH endonuclease | |||
| 6 | glycosyltransferase family 8 protein | |||
| 7 | M | M.HpyOki112ORF280P (87% identity) | M.HpyKH38ORFB1P | |
| 8 | site-specific DNA-methyltransferase | |||
| 7 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 8 | M | M.HpySW06XII (97% identity) | GCGC | M.HpyKH38ORFKP |
| 9 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 20 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 21 | R | HpyZ004XVIIIP (94% identity) | GTNNAC | HpyKH38ORFBP |
| 22 | M | M.HpyPO08XI (92% identity) | GTNNAC | M.HpyKH38ORFBP |
| 24 | ATP-dependent helicase | |||
| 13 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyKH8ORFC1P (89% identity) | HpyKH38ORFYP | |
| 16 | 107 aa hypothetical protein BB437_07770 | |||
| 21 | MBL fold metallo-hydrolase | |||
| 23 | RM | HpyC018ORF3525P (86% identity) | HpyKH38ORFFP | |
| 25 | -binding protein | |||
| 20 | DNA topoisomerase subunit B | |||
| 21 | M | M.HpyKH19ORFFP (98% identity) | GTAC | M.HpyKH38ORFRP |
| ??? | R | HpySW22IVP (96% identity) | GTAC | HpyKH38ORFRP |
| 25 | metalloendopeptidase like protein | |||
| 24 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpyLIM2ORF6720P (89% identity) | HpyKH38ORFVP | |
| 28 | adenine specific DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 28 | R | HpyKA2ORF6970P (92% identity) | HpyKH38ORFWP | |
| 29 | S41 family peptidase | |||
| 22 | Laminin subunit alpha-2 precursor | |||
| 24 | R | HpyK032XP (89% identity) | TCNNGA | HpyKH38ORFAP |
| 26 | M | M.HpyAL1VII (98% identity) | TCNNGA | M.HpyKH38ORFAP |
| 27 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 41 | HAD family hydrolase | |||
| 42 | M | M.HpyKH8ORFCP (96% identity) | M.HpyKH38ORFCP | |
| 43 | 59 aa hypothetical protein | |||
| 51 | DNA polymerase I | |||
| 53 | S | S.HpyNAB47ORFGP (91% identity) | S1.HpyKH38ORFQP | |
| 54 | S | S.HpySWT03ORF7175P (51% identity) | S2.HpyKH38ORFQP | |
| 55 | RM | HpyME07ORF6770P (98% identity) | HpyKH38ORFQP | |
| 56 | ComF family protein | |||
| 44 | 74 aa hypothetical protein | |||
| 45 | R | HpyBGR6ORF2270P (79% identity) | HpyKH38ORFSP | |
| ??? | M | M.HpyS298ORF2445P (97% identity) | M.HpyKH38ORFSP | |
| 50 | GIY-YIG nuclease family protein | |||
| ??? | hypothetical protein | |||
| ??? | R | Hpy7ORF2165P (99% identity) | HpyKH38ORFTP | |
| ??? | M | M.HpyKG8ORF3415P (96% identity) | M.HpyKH38ORFTP | |
| 57 | 112 aa hypothetical protein | |||
| 60 | modification methylase VspI domain protein | |||
| 61 | M | M.HpyMA19IV (97% identity) | ATTAAT | M.HpyKH38ORFUP |
| 62 | 369 aa hypothetical protein HPSA_04470 | |||
| 74 | elongation factor Ts | |||
| 76 | R | HpySP702XIIP (99% identity) | TGCA | HpyKH38ORFDP |
| 79 | M | M.HpyL021VII (98% identity) | TGCA | M.HpyKH38ORFDP |
| 80 | 61 aa hypothetical protein | |||
| 96 | YjgP/YjgQ family permease | |||
| 97 | M | M1.HpyISR9III (99% identity) | CCATC | M1.HpyKH38ORFJP |
| 98 | M | M1.HpySP307III (93% identity) | CCATC | M2.HpyKH38ORFJP |
| 99 | R | HpyHPYORF145P (98% identity) | CCATC | HpyKH38ORFJP |
| 100 | outer membrane protein | |||
| 121 | CAAX protease | |||
| 122 | RM | HpyL007ORF7090P (65% identity) | HpyKH38ORFOP | |
| 123 | 970 aa hypothetical protein | |||
| 121 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| 122 | M | M.HpyL017ORF1880P (99% identity) | M.HpyKH38ORFGP | |
| 123 | Translation elongation factor LepA | |||
| 237 | chaperone protein ClpB | |||
| 240 | M | M.Hpyfe36ORF5795P (99% identity) | CCGG | M.HpyKH38ORFHP |
| 241 | R | endonuclease MjaVIP | CCGG | HpyKH38ORFHP |
| 242 | 60 aa hypothetical protein | |||
| 243 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 244 | M | M.HpyPE130IX (96% identity) | TCGA | M.HpyKH38ORFIP |
| 245 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | R | HpyF021ORF6590P (87% identity) | HpyKH38ORFMP | |
| 2 | M | M.HpyNCI40ORFC1P (93% identity) | M.HpyKH38ORFMP | |
| 3 | DNA/RNA non-specific endonuclease | |||
| 16 | rod shape-determining MreC family protein | |||
| 18 | R | HpyF018ORF6445P (94% identity) | HpyKH38ORFXP | |
| 20 | M | M.HpySP413XV (75% identity) | M.HpyKH38ORFXP | |
| 122 | class I SAM-dependent DNA methyltransferase | |||
| 123 | R | HpyC010ORF7380P (96% identity) | HpyKH38ORFPP | |
| 126 | site-specific DNA-methyltransferase | |||
| 127 | 97 aa hypothetical protein | |||
| 128 | M | M.HpyKH18ORFQP (67% identity) | M.HpyKH38ORFPP | |
| 129 | ATP-dependent DNA helicase | |||