Helicobacter pylori HP42K |
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Putative Helicobacter pylori HP42K RM systems
Ref: Voropaev,E.V. et al. unpublished
REBASE ref # 27833
Complete sequence: 1,645,783 bp
GenBank #: CP034314
REBASE acronym: Hpy42K
Org_num: 32107
All begin D8X56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2250 | 0 aa hypothetical protein | |||
| 2255 | S | S.HpyCOL114ORF1980P (98% identity) | S.Hpy42KORF2260P | |
| 2260 | M | M.HpyIR3ORF4060P (94% identity) | M.Hpy42KORF2260P | |
| 2265 | R | type I restriction endonuclease subunit R | Hpy42KORF2260P | |
| 2270 | relaxase | |||
| 4120 | outer membrane beta-barrel protein HofF | |||
| 4125 | S | S.HpyMA16XV (65% identity) | S.Hpy42KORF4125P | |
| 4130 | cadmium-translocating P-type ATPase | |||
| 4410 | hydroxyethylthiazole kinase | |||
| 4415 | R | HpyLI13ORF4490P (95% identity) | Hpy42KORF4425P | |
| 4420 | S | S.HpyP107ORF3860P (93% identity) | S.Hpy42KORF4425P | |
| 4425 | M | M.HpyL020II (79% identity) | M.Hpy42KORF4425P | |
| 4430 | type I restriction endonuclease | |||
| 7125 | nickel-binding protein HpnL | |||
| 7130 | S | S.HpySP01XIII (97% identity) | S.Hpy42KORF7130P | |
| 7135 | formyltetrahydrofolate deformylase | |||
| 7670 | 303 aa hypothetical protein | |||
| 7675 | S | S.HpyCOL310ORF7305P (97% identity) | S.Hpy42KORF7680P | |
| 7680 | M | M.HpyP109ORF7445P (96% identity) | M.Hpy42KORF7680P | |
| 7685 | R | HpyUM085ORF3775P (93% identity) | Hpy42KORF7680P | |
| 7690 | M48 family peptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 335 | agmatine deiminase | |||
| 340 | M | M1.Hpy5AEK1ORFZP (98% identity) | CCTC | M1.Hpy42KORF340P |
| 345 | M | M2.HpyKH1ORFRP (98% identity) | CCTC | M2.Hpy42KORF340P |
| 350 | restriction endonuclease | |||
| 345 | DNA cytosine methyltransferase | |||
| 350 | R | HpyP103VIIP (97% identity) | CCTTC | Hpy42KORF355P |
| 355 | M | M.HpyP103XVII (99% identity) | CCTTC | M.Hpy42KORF355P |
| 360 | sodium/proline symporter PutP | |||
| 565 | 0 aa hypothetical protein | |||
| 570 | M | M.HpySP310VI (97% identity) | GATC | M.Hpy42KORF570P |
| 575 | alpha-1,2-fucosyltransferase | |||
| 1380 | exodeoxyribonuclease VII large subunit | |||
| 1385 | M | M.HpyLIM8IX (98% identity) | TCGA | M.Hpy42KORF1385P |
| 1390 | 204 aa hypothetical protein | |||
| 1390 | 204 aa hypothetical protein | |||
| 1395 | R | Hpy5108ORF7845P (96% identity) | CCGG | Hpy42KORF1400P |
| 1400 | M | M.HpyU410III (99% identity) | CCGG | M.Hpy42KORF1400P |
| 1405 | AAA family ATPase | |||
| 2515 | outer membrane protein | |||
| 2520 | M | M.HpyGRE039II (97% identity) | ATTAAT | M.Hpy42KORF2520P |
| 2525 | lipopolysaccharide heptosyltransferase family | |||
| 2530 | translational GTPase TypA | |||
| 2535 | M | M.Hpy180ORF2410P (99% identity) | ACNGT | M.Hpy42KORF2535P |
| 2540 | R | HpyBGR10IIP (100% identity) | ACNGT | Hpy42KORF2535P |
| 2545 | site-specific integrase | |||
| 2675 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2680 | M | M.HpyJO8X (99% identity) | GTAC | M.Hpy42KORF2680P |
| 2685 | R | HpyISR1IXP (97% identity) | GTAC | Hpy42KORF2680P |
| 2690 | M23 family metallopeptidase | |||
| 3510 | (Fe-S)-binding protein | |||
| 3515 | RM | HpyP005ORF3490P (90% identity) | Hpy42KORF3515P | |
| 3520 | outer membrane protein | |||
| 4710 | flagellar hook protein FlgE | |||
| 4715 | R | Hpy928ORFTP (98% identity) | GTNNAC | Hpy42KORF4720P |
| 4720 | M | M.HpySP04XI (97% identity) | GTNNAC | M.Hpy42KORF4720P |
| 4725 | ATP-dependent helicase | |||
| 5415 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5420 | M | M.HpySW30III (99% identity) | TCNNGA | M.Hpy42KORF5420P |
| 5425 | R | HpyI017IIP (100% identity) | TCNNGA | Hpy42KORF5420P |
| 5430 | Laminin subunit alpha-2 precursor | |||
| 5625 | 144 aa hypothetical protein | |||
| 5630 | M | M.HpyNP13XIV (95% identity) | GCGC | M.Hpy42KORF5630P |
| 5635 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6100 | HAD family hydrolase | |||
| 6105 | M | M.HpyKH41ORFEP (98% identity) | CATG | M.Hpy42KORF6105P |
| 6110 | IceA2 protein | |||
| 6825 | S41 family peptidase | |||
| 6830 | R | HpyI012VIP (96% identity) | GANTC | Hpy42KORF6835P |
| 6835 | M | M.HpyL031ORF6510P (99% identity) | GANTC | M.Hpy42KORF6835P |
| ??? | hypothetical protein | |||
| 6835 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyLIM1ORF6590P (91% identity) | Hpy42KORF6845P | |
| 6850 | carboxylating nicotinate-nucleotide | |||
| 7040 | glycosyltransferase family 8 protein | |||
| 7045 | R | HpyP107ORF6850P (100% identity) | Hpy42KORF7045P | |
| 7050 | DNA (cytosine-5-)-methyltransferase | |||
| 7045 | 204 aa hypothetical protein | |||
| 7050 | M | M.HpyR06ORF6955P (100% identity) | M.Hpy42KORF7050P | |
| 7055 | 0 aa hypothetical protein | |||
| 7350 | 0 aa hypothetical protein | |||
| 7355 | RM | HpyPO07ORF7150P (79% identity) | Hpy42KORF7355P | |
| 7360 | CAAX protease | |||
| 7430 | outer membrane protein | |||
| 7435 | R | HpyKH35ORFPP (97% identity) | CCATC | Hpy42KORF7440P |
| 7440 | M | M2.HpySWT10IV (100% identity) | CCATC | M2.Hpy42KORF7440P |
| 7445 | M | M1.HpyR04IV (99% identity) | CCATC | M1.Hpy42KORF7440P |
| 7450 | YjgP/YjgQ family permease | |||
| 7575 | ComF family protein | |||
| 7580 | RM | HpyF004ORF7095P (98% identity) | Hpy42KORF7580P | |
| 7585 | S | S.HpyIR9ORF6995P (96% identity) | S.Hpy42KORF7580P | |
| 7590 | DNA polymerase I | |||
| 7760 | 68 aa hypothetical protein | |||
| 7765 | M | M.HpyBGR3XII (97% identity) | TGCA | M.Hpy42KORF7765P |
| 7770 | R | HpyL024VIP (98% identity) | TGCA | Hpy42KORF7765P |
| 7775 | cytochrome c1 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6900 | response regulator transcription factor | |||
| ??? | M | M.HpySW12ORF6830P (95% identity) | M.Hpy42KORF6905P | |
| 6915 | R | HpySP709ORF2150P (94% identity) | Hpy42KORF6905P | |
| 6920 | rod shape-determining protein MreC | |||
| 6970 | DNA/RNA non-specific endonuclease | |||
| 6975 | M | M.HpyBGR10ORF6430P (95% identity) | M.Hpy42KORF6975P | |
| 6980 | R | HpyIR9XIIIP (92% identity) | Hpy42KORF6975P | |
| 6985 | biotin synthase | |||
| 7305 | ATP-dependent DNA helicase RecG | |||
| 7310 | M | M.HpyP101ORF6720P (97% identity) | M.Hpy42KORF7310P | |
| 7315 | R | HpyT008ORF7150P (94% identity) | Hpy42KORF7310P | |
| 7320 | 202 aa hypothetical protein | |||