Helicobacter pylori KH33 |
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Putative Helicobacter pylori KH33 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
GenBank #: PHLS00000000
REBASE acronym: HpyKH33
Org_num: 32011
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyT004XIV (98% identity) | S.HpyKH33ORFJP | |
| 2 | M | M.HpyGE1ORF2340P (95% identity) | M.HpyKH33ORFJP | |
| 3 | R | Hpy444A6ORFFP (69% identity) | HpyKH33ORFJP | |
| 4 | 631 aa hypothetical protein U063_1207 | |||
| 93 | hydroxyethylthiazole kinase | |||
| 94 | R | HpyI007ORF4130P (95% identity) | HpyKH33ORFAP | |
| 97 | S | S.HpyMA22ORF4155P (96% identity) | S.HpyKH33ORFAP | |
| 98 | M | M.Hpyfe93ORF4710P (94% identity) | M.HpyKH33ORFAP | |
| 99 | phosphatase PAP2 family protein | |||
| 107 | M48 family peptidase | |||
| 110 | R | HpyNCI56ORFF1P (95% identity) | HpyKH33ORFLP | |
| 111 | M | M.HpySW26ORF7465P (96% identity) | M.HpyKH33ORFLP | |
| 113 | S | S.HpyKH26ORFJP (60% identity) | S1.HpyKH33ORFLP | |
| 114 | S | S.HpyC20XII (29% identity) | S2.HpyKH33ORFLP | |
| 115 | LPP20 lipofamily protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyJA104ORF2385P (98% identity) | ATTAAT | M.HpyKH33ORFTP |
| 2 | modification methylase VspI domain protein | |||
| 5 | 108 aa hypothetical protein | |||
| 6 | M | M.HpyCRI8ORF2030P (98% identity) | ACNGT | M.HpyKH33ORFUP |
| 7 | R | HpyPE140IIP (99% identity) | ACNGT | HpyKH33ORFUP |
| 9 | DNA cytosine methyltransferase | |||
| 7 | GIY-YIG nuclease family protein | |||
| 9 | M | M.HpyU201ORF2490P (89% identity) | M.HpyKH33ORFVP | |
| 10 | catalase family peroxidase | |||
| 22 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 23 | R | HpyME27VIP (97% identity) | GTNNAC | HpyKH33ORFEP |
| 24 | M | M.Hpy478AORFIP (98% identity) | GTNNAC | M.HpyKH33ORFEP |
| 26 | ATP-dependent helicase | |||
| 21 | DNA topoisomerase subunit B | |||
| 23 | M | M.HpyB125AORF4975P (96% identity) | GTAC | M.HpyKH33ORFKP |
| ??? | R | HpyKH17ORFFP (94% identity) | GTAC | HpyKH33ORFKP |
| 26 | metalloendopeptidase like protein | |||
| 36 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 37 | M | M.HpyNP13XIV (96% identity) | GCGC | M.HpyKH33ORFIP |
| 38 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 36 | alpha-1,2-fucosyltransferase | |||
| 37 | M | M.HpySWT04VII (95% identity) | M.HpyKH33ORFBP | |
| 39 | 138 aa hypothetical protein | |||
| 40 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyL023ORF6635P (87% identity) | HpyKH33ORFRP | |
| 45 | site-specific DNA-methyltransferase | |||
| 51 | ulcer-associated gene restriction endonuclease | |||
| 52 | M | M.HpyKH20ORFAP (100% identity) | CATG | M.HpyKH33ORFDP |
| 53 | HAD family hydrolase | |||
| ??? | hypothetical protein | |||
| 45 | M | M.HpyKH1ORFVP (100% identity) | GANTC | M.HpyKH33ORFSP |
| 46 | R | HpyIR2ORF6275P (98% identity) | GANTC | HpyKH33ORFSP |
| 47 | S41 family peptidase | |||
| 61 | pseudaminic acid synthase | |||
| ??? | R | R2.Hpy45kORF5465P (97% identity) | R1.HpyKH33ORFNP | |
| 63 | R | R1.HpyHK840ORFG1P (96% identity) | R2.HpyKH33ORFNP | |
| 64 | DNA cytosine methyltransferase | |||
| 65 | M | M1.HpySP705ORF1095P (97% identity) | M.HpyKH33ORFNP | |
| 66 | elongation factor P | |||
| 76 | anthranilate synthase component I TrpE domain protein | |||
| 77 | R | HpyBG10IXP (99% identity) | TGCA | HpyKH33ORFGP |
| 79 | M | M.HpyPE102VIII (98% identity) | TGCA | M.HpyKH33ORFGP |
| 80 | 68 aa hypothetical protein | |||
| 77 | chaperone protein ClpB | |||
| ??? | M | M.HpySW27ORF1315P (95% identity) | M.HpyKH33ORFXP | |
| 83 | R | HpyI018ORF1290P (92% identity) | HpyKH33ORFXP | |
| 84 | 60 aa hypothetical protein | |||
| 74 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| ??? | M | M.HpySW14III (99% identity) | M.HpyKH33ORFWP | |
| ??? | R | Hpy180ORF5345P (99% identity) | HpyKH33ORFWP | |
| 79 | Laminin subunit alpha-2 precursor | |||
| 109 | sodium/proline symporter | |||
| 110 | R | HpyKH39ORFOP (96% identity) | CCTC | HpyKH33ORFCP |
| 111 | DNA methyltransferase | |||
| 112 | M | M2.HpyKH39ORFOP (98% identity) | CCTC | M2.HpyKH33ORFCP |
| 114 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 142 | DNA polymerase I | |||
| 144 | S | S.HpyL015ORF7035P (47% identity) | S1.HpyKH33ORFMP | |
| 145 | S | S.HpySW36ORF7090P (50% identity) | S2.HpyKH33ORFMP | |
| 147 | RM | HpyKG5ORF6975P (98% identity) | HpyKH33ORFMP | |
| 148 | ComF family protein | |||
| 209 | DUF4065 domain-containing protein | |||
| 210 | RM | HpyOK68ORFEP (86% identity) | HpyKH33ORFPP | |
| 212 | DEAD/DEAH box helicase | |||
| 271 | -binding protein | |||
| 272 | RM | HpyUM111ORF6460P (81% identity) | HpyKH33ORFFP | |
| 274 | 138 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2 | biotin synthase | |||
| 4 | R | HpySW05XIVP (91% identity) | HpyKH33ORFHP | |
| 6 | M | M.HpyT009ORF6735P (94% identity) | M.HpyKH33ORFHP | |
| 7 | DNA/RNA non-specific endonuclease | |||
| 24 | 67 aa hypothetical protein | |||
| 25 | R | HpyL003ORF385P (93% identity) | HpyKH33ORFOP | |
| ??? | M | M.HpyR07ORF6665P (93% identity) | M.HpyKH33ORFOP | |
| 29 | DNA-binding response regulator | |||
| 210 | class I SAM-dependent DNA methyltransferase | |||
| 212 | R | HpyV002ORF7350P (93% identity) | HpyKH33ORFQP | |
| ??? | M | M.HpyBR15ORF7145P (96% identity) | M.HpyKH33ORFQP | |
| 217 | ATP-dependent DNA helicase | |||