Helicobacter pylori KH32 |
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Putative Helicobacter pylori KH32 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,611,728 bp
GenBank #: PHLT00000000 (NZ_PHLT00000000)
REBASE acronym: HpyKH32
Org_num: 32010
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.Hpy75ORFDP (96% identity) | S.HpyKH32ORFMP | |
| 2 | R | HpyKH7ORFRP (96% identity) | HpyKH32ORFMP | |
| 5 | hydroxyethylthiazole kinase | |||
| 1 | S | S.HpyUM067ORF2910P (98% identity) | S.HpyKH32ORFYP | |
| 2 | M | M.HpyF007ORF2325P (95% identity) | M.HpyKH32ORFYP | |
| ??? | R | HpyHORF438P (88% identity) | HpyKH32ORFYP | |
| 5 | 631 aa hypothetical protein U063_1207 | |||
| 50 | DNA cytosine methyltransferase | |||
| ??? | M | M.HpyKH36ORFQP (96% identity) | M.HpyKH32ORFTP | |
| 88 | cadmium-translocating P-type ATPase | |||
| 92 | S | S.HpyDO1ORF2750P (90% identity) | S.HpyKH32ORFNP | |
| 93 | outer membrane beta-barrel protein HofF | |||
| 233 | M48 family peptidase | |||
| 236 | R | HpyMA02ORF7510P (94% identity) | HpyKH32ORFKP | |
| 237 | M | M.HpyKH37ORFMP (97% identity) | M.HpyKH32ORFKP | |
| 238 | 258 aa unknown | |||
| 239 | S | S.HpyDU15ORF7105P (96% identity) | S.HpyKH32ORFKP | |
| 241 | glutamine--fructose-6-phosphate transaminase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | adenine specific DNA methyltransferase 2 domain protein | |||
| 3 | M | M.HpyMM03IX (98% identity) | GANTC | M.HpyKH32ORFLP |
| 4 | R | HpyFD535ORFMP (97% identity) | GANTC | HpyKH32ORFLP |
| 5 | adenine specific DNA methyltransferase 2 domain protein | |||
| 1 | M | M2.HpyKH32ORFJP (100% identity) | GATC | M1.HpyKH32ORFJP |
| 2 | M | M1.HpyKH32ORFJP (100% identity) | GATC | M2.HpyKH32ORFJP |
| 3 | R | HpyFD719ORF765P (97% identity) | GATC | HpyKH32ORFJP |
| 4 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 5 | glycosyltransferase family 8 protein | |||
| 6 | M | M.HpyMA04VI (99% identity) | GAATTC | M.HpyKH32ORFXP |
| ??? | R | HpyT001ORF6855P (86% identity) | GAATTC | HpyKH32ORFXP |
| 9 | UDP-N-acetylmuramate dehydrogenase | |||
| 5 | 76 aa hypothetical protein SE87_02515 | |||
| 6 | R | 198 aa hypothetical protein | ACGT | HpyKH32ORFZP |
| 7 | M | M.HpyKH11ORFD1P (97% identity) | ACGT | M.HpyKH32ORFZP |
| 8 | GIY-YIG nuclease family protein | |||
| 5 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 6 | M | M.HpyCOL302XVIII (97% identity) | GCGC | M.HpyKH32ORFIP |
| 7 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 7 | DNA cytosine methyltransferase | |||
| 8 | R | HpyKH37ORFD1P (97% identity) | HpyKH32ORFA1P | |
| 10 | M | M.HpyKH43ORFC1P (98% identity) | M.HpyKH32ORFA1P | |
| 12 | 112 aa hypothetical protein | |||
| 15 | modification methylase VspI domain protein | |||
| ??? | M | M.Hpy5AEK1ORFRP (95% identity) | M.HpyKH32ORFB1P | |
| 19 | DNA topoisomerase subunit B | |||
| 21 | M | M.HpyKH45ORFJP (97% identity) | M.HpyKH32ORFHP | |
| 22 | R | HpyKH11ORFGP (94% identity) | HpyKH32ORFHP | |
| 23 | metalloendopeptidase like protein | |||
| 48 | 97 aa hypothetical protein 1_17C_ICEHptfs4b_14 | |||
| 49 | R | HpyOK304ORFWP (98% identity) | HpyKH32ORFSP | |
| 50 | M | M.HpyKH14ORFMP (99% identity) | M.HpyKH32ORFSP | |
| 51 | type I restriction-modification system subunit M | |||
| 39 | Laminin subunit alpha-2 precursor | |||
| 41 | R | HpyNP13XIIP (98% identity) | TCNNGA | HpyKH32ORFEP |
| 42 | M | M.HpyKG6XIII (99% identity) | TCNNGA | M.HpyKH32ORFEP |
| 43 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 41 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyMM03ORF6570P (89% identity) | HpyKH32ORFWP | |
| 55 | HAD family hydrolase | |||
| 56 | M | M.HpyNCI14I (94% identity) | M.HpyKH32ORFFP | |
| 57 | 59 aa hypothetical protein | |||
| 67 | sodium/proline symporter | |||
| 68 | M | M.HpyUM114ORF1165P (78% identity) | CCTC | M1.HpyKH32ORFC1P |
| 70 | DNA methyltransferase | |||
| 130 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 131 | R | HpyPE106ORF4395P (96% identity) | GTNNAC | HpyKH32ORFGP |
| 132 | M | M.HpyMA02III (92% identity) | GTNNAC | M.HpyKH32ORFGP |
| 133 | ATP-dependent helicase | |||
| 221 | exodeoxyribonuclease VII large subunit | |||
| 222 | M | M.HpyFD719ORF1750P (91% identity) | M.HpyKH32ORFBP | |
| 223 | 64 aa hypothetical protein HMPREF1401_01153 | |||
| 223 | 64 aa hypothetical protein HMPREF1401_01153 | |||
| 224 | R | endonuclease MjaVIP | CCGG | HpyKH32ORFCP |
| 225 | M | M.HpyKG7IV (97% identity) | CCGG | M.HpyKH32ORFCP |
| 226 | chaperone protein ClpB | |||
| 226 | -binding protein | |||
| 227 | RM | DEAD/DEAH box helicase | HpyKH32ORFOAP | |
| 229 | RM | HpyKH36ORFXBP (76% identity) | HpyKH32ORFOBP | |
| 231 | outer membrane protein | |||
| 260 | 969 aa hypothetical protein | |||
| 262 | RM | Hpy13AEK8ORFE1P (90% identity) | HpyKH32ORFQP | |
| 263 | transcription termination/antitermination protein NusA | |||
| 297 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 298 | R | HpyGRE046VIP (86% identity) | CTNAG | HpyKH32ORFDP |
| 301 | M | M.HpyPU006VI (99% identity) | CTNAG | M.HpyKH32ORFDP |
| 302 | 125 aa hypothetical protein | |||
| 322 | ComF family protein | |||
| 324 | RM | HpyMA19ORF6905P (98% identity) | HpyKH32ORFUP | |
| 325 | S | S.HpyBR8ORF7075P (50% identity) | S1.HpyKH32ORFUP | |
| 327 | S | S2.HpyOK317ORFJP (92% identity) | S2.HpyKH32ORFUP | |
| 329 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2 | biotin synthase | |||
| 4 | R | HpyKH31ORFWP (92% identity) | HpyKH32ORFRP | |
| 5 | M | M.HpyNP02ORF6555P (93% identity) | M.HpyKH32ORFRP | |
| 7 | DNA/RNA non-specific endonuclease | |||
| 23 | rod shape-determining MreC family protein | |||
| ??? | R | HpyMA04ORF5590P (91% identity) | HpyKH32ORFVP | |
| ??? | M | M.HpyIN8ORF6695P (94% identity) | M.HpyKH32ORFVP | |
| 30 | DNA-binding response regulator | |||
| 109 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 110 | R | HpySP101ORF3570P (95% identity) | HpyKH32ORFAP | |
| 111 | M | M.HpyMA25ORF3775P (94% identity) | M.HpyKH32ORFAP | |
| 112 | 83 aa hypothetical protein HMPREF1403_00513 | |||
| 256 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyQ35ORFFP (96% identity) | M.HpyKH32ORFPP | |
| 260 | R | HpyKH7ORFJP (97% identity) | HpyKH32ORFPP | |
| 262 | 1259 aa hypothetical protein | |||