Escherichia coli 4/0 |
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Putative Escherichia coli 4/0 RM systems
Ref: Sandegren,L. unpublished
REBASE ref # 27796
| Sequence length: | GenBank #: | |
| Chromosome: | 5,243,509 bp | CP023849 |
| plasmid p4_0.1: | 138,672 bp | CP023850 |
| plasmid p4_0.2: | 110,452 bp | CP023851 |
REBASE acronym: EcoSL40
Org_num: 32052
All begin CRT34_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1560 | 52 aa hypothetical protein | |||
| 1565 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoSL40ORF1570P |
| 1570 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoSL40ORF1570P |
| 1575 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoSL40ORF1570P |
| 1580 | 267 aa hypothetical protein | |||
| 26985 | endoribonuclease SymE | |||
| 26990 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoSL40ORF27000P |
| 26995 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoSL40ORF27000P |
| 27000 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoSL40ORF27000P |
| 27005 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5240 | 71 aa hypothetical protein | |||
| 5245 | M | M.KpnYN1ORFGP (89% identity) | M.EcoSL40ORF5245P | |
| 5250 | XRE family transcriptional regulator | |||
| 7630 | TrmB family transcriptional regulator | |||
| 7635 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoSL40ORF7635P |
| 7650 | 108 aa hypothetical protein | |||
| 11365 | drug/metabolite exporter YedA | |||
| 11370 | V | V.SflC32DcmP (74% identity) | V.EcoSL40DcmP | |
| 11375 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoSL40DcmP |
| 11380 | phosphohydrolase | |||
| 15180 | PerC family transcriptional regulator | |||
| 15185 | M | M.EcoST131bORFEP (100% identity) | M.EcoSL40ORF15185P | |
| 15190 | serine/threonine protein phosphatase | |||
| 19750 | Fis family transcriptional regulator | |||
| 19755 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSL40ORF19755P |
| 19760 | transporter | |||
| 20395 | ribulose-phosphate 3-epimerase | |||
| 20400 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSL40DamP |
| 20405 | cell division protein DamX | |||
| 25115 | 81 aa hypothetical protein | |||
| 25120 | M | M.EcosS3ORF15775P (100% identity) | M.EcoSL40ORF25120P | |
| 25125 | ATP-binding protein | |||
| 26585 | 0 aa hypothetical protein | |||
| 26590 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoSL40ORF26590P |
| 26595 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoSL40ORF26590P |
| 26600 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoSL40ORF26590P |
| 26605 | restriction endonuclease | |||
| plasmid p4_0.1 | ||||
| 27660 | 73 aa hypothetical protein | |||
| 27665 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoSL40ORF27665P |
| 27670 | 0 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 26600 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| ??? | R | EcoU15AMcrCP (100% identity) | EcoSL40McrCP | |
| 26615 | IS3 family transposase | |||
| 26620 | R | EcosS3McrBP (59% identity) | EcoSL40McrBP | |
| 26625 | 60 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid p4_0.2 | ||||
| 28800 | 76 aa hypothetical protein | |||
| 28805 | M | M.Sso524ORF460P (100% identity) | M.EcoSL40ORF28805P | |
| 28810 | 269 aa hypothetical protein | |||