Escherichia coli 4/4 |
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Putative Escherichia coli 4/4 RM systems
Ref: Sandegren,L. unpublished
REBASE ref # 27796
| Sequence length: | GenBank #: | |
| Chromosome: | 5,129,468 bp | CP023826 |
| plasmid p4_4.1: | 125,877 bp | CP023827 |
| plasmid p4_4.2: | 67,839 bp | CP023828 |
REBASE acronym: EcoS44
Org_num: 32042
All begin CRT43_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1575 | 52 aa hypothetical protein | |||
| 1580 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS44ORF1585P |
| 1585 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS44ORF1585P |
| 1590 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS44ORF1585P |
| 1595 | 267 aa hypothetical protein | |||
| 26445 | endoribonuclease SymE | |||
| 26450 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoS44ORF26460P |
| 26455 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoS44ORF26460P |
| 26460 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoS44ORF26460P |
| 26465 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5290 | 71 aa hypothetical protein | |||
| 5295 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS44ORF5295P | |
| 5300 | XRE family transcriptional regulator | |||
| 7705 | TrmB family transcriptional regulator | |||
| 7710 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS44ORF7710P |
| 7725 | 108 aa hypothetical protein | |||
| 11390 | drug/metabolite exporter YedA | |||
| 11395 | V | V.SflC32DcmP (74% identity) | V.EcoS44DcmP | |
| 11400 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS44DcmP |
| 11405 | phosphohydrolase | |||
| 14960 | PerC family transcriptional regulator | |||
| 14965 | M | M.EcoFu019ORF18055P (100% identity) | M.EcoS44ORF14965P | |
| 14970 | 87 aa hypothetical protein | |||
| 19695 | Fis family transcriptional regulator | |||
| 19700 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS44ORF19700P |
| 19705 | transporter | |||
| 20330 | ribulose-phosphate 3-epimerase | |||
| 20335 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS44DamP |
| 20340 | cell division protein DamX | |||
| 26045 | 0 aa hypothetical protein | |||
| 26050 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoS44ORF26050P |
| 26055 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS44ORF26050P |
| 26060 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS44ORF26050P |
| 26065 | restriction endonuclease | |||
| plasmid p4_4.1 | ||||
| 27035 | 73 aa hypothetical protein | |||
| 27040 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoS44ORF27040P |
| 27045 | 0 aa hypothetical protein | |||
| plasmid p4_4.2 | ||||
| 28065 | 73 aa hypothetical protein | |||
| 28070 | M | M.Sen143ORF26480P (100% identity) | M.EcoS44ORF28070P | |
| 28075 | 0 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 26060 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 26065 | R | EcosS9McrCP (100% identity) | EcoS44McrCP | |
| 26070 | R | EcosS3McrBP (100% identity) | EcoS44McrBP | |
| 26075 | 60 aa hypothetical protein | |||