Helicobacter pylori Hpbs1 |
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Putative Helicobacter pylori Hpbs1 RM systems
Ref: Huang,y. et al. unpublished
REBASE ref # 27778
Complete sequence: 1,563,701 bp
GenBank #: CP034071
REBASE acronym: Hpybs1
Org_num: 31965
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.Hpy180ORF4311P (69% identity) | M.Hpybs1ORFYP | |
| ??? | S | S.HpyP82ORFFP (96% identity) | S.Hpybs1ORFYP | |
| ??? | R | HpyTW23ORF4135P (97% identity) | Hpybs1ORFYP | |
| ??? | S | S.HpyJA103ORF2895P (97% identity) | S.Hpybs1ORFXP | |
| ??? | R | Hpyfe99ORF5195P (95% identity) | Hpybs1ORFTP | |
| ??? | M | M.HpyJ019X (97% identity) | M.Hpybs1ORFTP | |
| ??? | S | S.Hpyfe120ORF4990P (91% identity) | S.Hpybs1ORFTP | |
| ??? | R | Hpyfe74ORF7605P (96% identity) | Hpybs1ORFKP | |
| ??? | M | M.Hpyfe48ORF7700P (48% identity) | M1.Hpybs1ORFKP | |
| ??? | M | M.Hpyfe75ORF7840P (48% identity) | M2.Hpybs1ORFKP | |
| ??? | S | S.HpyJ019ORF7295P (96% identity) | S.Hpybs1ORFKP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | DEAD/DEAH box helicase | |||
| ??? | RM | Hpyfe95ORF55P (90% identity) | Hpybs1ORFJP | |
| ??? | RM | HpyUM065ORF3185P (98% identity) | Hpybs1ORFB1P | |
| ??? | S | S.Hpy21FORFAP (62% identity) | S.Hpybs1ORFB1P | |
| ??? | R | R2.HpyF233ORFUP (92% identity) | Hpybs1ORFZP | |
| ??? | M | M.HpyF219ORFLP (69% identity) | M.Hpybs1ORFZP | |
| ??? | M | M.HpyK119X (97% identity) | GCGC | M.Hpybs1ORFAP |
| ??? | R | Hpyfe37ORF2030P (100% identity) | TCNNGA | Hpybs1ORFBP |
| ??? | M | M.Hpyfe123ORF2045P (99% identity) | TCNNGA | M.Hpybs1ORFBP |
| ??? | M | M.HpyC124X (92% identity) | GTNNAC | M.Hpybs1ORFCP |
| ??? | R | HpyK009VIP (97% identity) | GTNNAC | Hpybs1ORFCP |
| ??? | RM | Hpyfe5ORF4050P (49% identity) | Hpybs1ORFDP | |
| ??? | R | HpyGC26ORFB1P (98% identity) | GTAC | Hpybs1ORFEP |
| ??? | M | M.HpyGC26ORFB1P (99% identity) | GTAC | M.Hpybs1ORFEP |
| ??? | R | HpyP82ORFA1P (99% identity) | Hpybs1ORFUP | |
| ??? | M | M.Hpyfe99ORF5080P (94% identity) | M.Hpybs1ORFUP | |
| ??? | GIY-YIG nuclease family protein | |||
| ??? | DNA cytosine methyltransferase | |||
| ??? | R | Hpyfe32ORF4930P (100% identity) | ACNGT | Hpybs1ORFVP |
| ??? | M | M.HpyAR8II (97% identity) | ACNGT | M.Hpybs1ORFVP |
| ??? | modification methylase VspI domain protein | |||
| ??? | modification methylase VspI domain protein | |||
| ??? | M | M.HpyK029II (98% identity) | ATTAAT | M.Hpybs1ORFWP |
| ??? | M | M.HpySW27ORF1745P (86% identity) | M.Hpybs1ORFFP | |
| ??? | M | M.HpyK007V (99% identity) | M.Hpybs1ORFRP | |
| ??? | R | Hpy271ORFNP (88% identity) | Hpybs1ORFRP | |
| ??? | DNA -methyltransferase | |||
| ??? | endonuclease MjaVIP | |||
| ??? | M | M.HpyTW16V (100% identity) | TCGA | M.Hpybs1ORFSP |
| ??? | M | M.Hpy3192ORF1230P (97% identity) | GATC | M.Hpybs1ORFGP |
| ??? | M | M.Hpyfe106ORF6910P (99% identity) | CCTTC | M.Hpybs1ORFPP |
| ??? | R | Hpyfe106ORF6910P (96% identity) | CCTTC | Hpybs1ORFPP |
| ??? | restriction endonuclease | |||
| ??? | 418 aa hypothetical protein | |||
| ??? | R | HpyML2ORFHP (95% identity) | CCTC | Hpybs1ORFQP |
| ??? | M | M2.HpyCA7IVP (99% identity) | CCTC | M2.Hpybs1ORFQP |
| ??? | M | M1.HpyK048VIII (98% identity) | CCTC | M1.Hpybs1ORFQP |
| ??? | R | Hpyfe48ORF7050P (99% identity) | GANTC | Hpybs1ORFNP |
| ??? | M | M.HpyAs009X (99% identity) | GANTC | M.Hpybs1ORFNP |
| ??? | adenine specific DNA methyltransferase | |||
| ??? | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyMA05ORF280P (28% identity) | Hpybs1ORFOBP | |
| ??? | RM | HpyK027ORF275P (64% identity) | Hpybs1ORFOAP | |
| ??? | R | Hpyfe63ORF7430P (99% identity) | TGCA | Hpybs1ORFHP |
| ??? | M | M.Hpyfe110ORF7955P (98% identity) | TGCA | M.Hpybs1ORFHP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyK024ORF7250P (97% identity) | M.Hpybs1ORFIP | |
| ??? | R | HpyK016ORF7125P (97% identity) | Hpybs1ORFIP | |
| ??? | class I SAM-dependent DNA methyltransferase | |||
| ??? | R | HpyP82ORFTP (92% identity) | Hpybs1ORFA1P | |
| ??? | M | M.Hpyfe54ORF655P (97% identity) | M.Hpybs1ORFA1P | |
| ??? | M | M.HpyP33ORFLP (97% identity) | M.Hpybs1ORFLP | |
| ??? | R | Hpyfe80ORF6895P (97% identity) | Hpybs1ORFLP | |