Neisseria gonorrhoeae FQ84 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Neisseria gonorrhoeae FQ84 RM systems
Ref: Fouts,D. et al. unpublished
REBASE ref # 27782
Complete sequence: 2,217,429 bp
GenBank #: CP034016
REBASE acronym: NgoFQ84
Org_num: 31980
All begin EGH15_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2435 | ADP-L-glycero-D-mannoheptose-6-epimerase | |||
| 2440 | M | M.NgoWSII (100% identity) | M.NgoFQ84ORF2440P | |
| 2445 | DNA damage-inducible protein D | |||
| 2450 | S | S.NgoTFGB2ORFAP (100% identity) | S.NgoFQ84ORF2440P | |
| 2455 | R | Ngos1291ORF7750P (100% identity) | NgoFQ84ORF2440P | |
| 2460 | ATP-dependent Clp protease ATP-binding subunit | |||
| 4025 | replication-associated recombination protein A | |||
| 4030 | R | NgoWLIP (100% identity) | GAGNNNNNTAC | NgoFQ84ORF4055P |
| 4035 | hydroxyacid dehydrogenase | |||
| 4040 | S | S.NgoWSI (100% identity) | GAGNNNNNTAC | S.NgoFQ84ORF4055P |
| 4045 | 186 aa hypothetical protein | |||
| 4050 | 0 aa hypothetical protein | |||
| 4055 | M | M.NgoJH12ORFKP (100% identity) | GAGNNNNNTAC | M.NgoFQ84ORF4055P |
| 4060 | ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | leucine--tRNA ligase | |||
| 50 | R | Ngos1291ORF5750P (100% identity) | GATC | NgoFQ84ORF50P |
| 55 | DNA adenine methylase | |||
| 55 | DNA adenine methylase | |||
| 60 | M | M.Ngos1291ORF5755P (100% identity) | M.NgoFQ84ORF60P | |
| 65 | 0 aa hypothetical protein | |||
| 1835 | phenylalanine--tRNA ligase subunit alpha | |||
| 1840 | V | V.NgoWSORF391P (100% identity) | V.NgoFQ84ORF1845P | |
| ??? | M | M.NgoWSORF391P (100% identity) | M.NgoFQ84ORF1845P | |
| 1855 | R | NgoWSORF391P (100% identity) | NgoFQ84ORF1845P | |
| 1860 | phenylalanine--tRNA ligase subunit beta | |||
| 2155 | IS1595 family transposase | |||
| 2160 | M | NgoWOORF381P (100% identity) | GACNNNNNTGA | M.NgoFQ84ORF2160P |
| 2165 | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.NgoFQ84ORF2160P |
| 2170 | 0 aa hypothetical protein | |||
| 2195 | uroporphyrinogen decarboxylase | |||
| 2200 | H | H.Ngos1291ORF7560P (100% identity) | H.NgoFQ84ORF2210P | |
| 2205 | R | Ngos1291ORF7560P (100% identity) | GCSGC | NgoFQ84ORF2210P |
| 2210 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.NgoFQ84ORF2210P |
| 2215 | 78 aa hypothetical protein | |||
| 3915 | 3-isopropylmalate dehydrogenase | |||
| 3920 | R | Ngos1291ORF9120P (100% identity) | GGNNCC | NgoFQ84ORF3925P |
| 3925 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.NgoFQ84ORF3925P |
| 3930 | 3-isopropylmalate dehydratase small subunit | |||
| 5350 | anthranilate synthase component I | |||
| 5355 | M | M.Ngos1291ORF10080P (100% identity) | GCCGGC | M.NgoFQ84ORF5355P |
| 5360 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | NgoFQ84ORF5355P |
| 5365 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 6885 | 60 aa hypothetical protein | |||
| 6890 | V | V.Ngos1291ORF65P (100% identity) | V.NgoFQ84ORF6900P | |
| 6895 | R | Ngos1291ORF65P (100% identity) | NgoFQ84ORF6900P | |
| ??? | M | M.NgoJH7ORFGP (100% identity) | CCGG | M.NgoFQ84ORF6900P |
| 6910 | 48 aa hypothetical protein | |||
| 7135 | excinuclease ABC subunit UvrA | |||
| 7140 | R | Ngos1291ORF260P (100% identity) | CCGCGG | NgoFQ84ORF7145P |
| 7145 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.NgoFQ84ORF7145P |
| 7150 | transposase | |||
| 10775 | group 2 glycosyl transferase | |||
| 10780 | R | Ngos1291ORF3515P (100% identity) | GGCC | NgoFQ84ORF10785P |
| 10785 | M | M.NgoSH240ORFKP (100% identity) | GGCC | M.NgoFQ84ORF10785P |
| 10790 | ribosome recycling factor | |||
| 11365 | 0 aa hypothetical protein | |||
| 11370 | R | NgoWSIIIP (100% identity) | GGTGA | NgoFQ84ORF11375P |
| 11375 | M | M1.NgoJH17ORFQP (100% identity) | GGTGA | M1.NgoFQ84ORF11375P |
| 11380 | M | M2.Ngos1291II (100% identity) | GGTGA | M2.NgoFQ84ORF11375P |
| 11385 | RNA-binding transcriptional accessory protein | |||
| 12025 | GTPase ObgE | |||
| 12030 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.NgoFQ84ORF12030P |
| 12035 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | NgoFQ84ORF12030P |
| 12040 | cysteine--tRNA ligase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3200 | peptidyl-prolyl cis-trans isomerase | |||
| 3205 | M | M.NgoWFI (100% identity) | CCACC | M.NgoFQ84ORF3205P |
| 3210 | R | Ngos1291ORF8455P (100% identity) | CCACC | NgoFQ84ORF3205P |
| 3215 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 3700 | alpha-hydroxy-acid oxidizing protein | |||
| 3705 | R | NgoJH8ORFHP (100% identity) | NgoFQ84ORF3710P | |
| ??? | M | M.NgoFQ84ORFAP (100% identity) | M.NgoFQ84ORF3710P | |
| 3720 | tRNA pseudouridine(55) synthase TruB | |||
| 3705 | type III restriction endonuclease subunit R | |||
| ??? | M | M.NgoFQ84ORF3710P (100% identity) | M.NgoFQ84ORFAP | |
| 3720 | tRNA pseudouridine(55) synthase TruB | |||