Helicobacter pylori KH30 |
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Putative Helicobacter pylori KH30 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,580,459 bp
GenBank #: PHLV00000000 (NZ_PHLV00000000)
REBASE acronym: HpyKH30
Org_num: 31939
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 18 | 631 aa hypothetical protein U063_1207 | |||
| ??? | R | Hpy476CORFWP (89% identity) | HpyKH30ORFNP | |
| 21 | M | M.HpyIN5ORF2140P (100% identity) | M.HpyKH30ORFNP | |
| 22 | S | S.HpyIN5ORF2140P (100% identity) | S.HpyKH30ORFNP | |
| 23 | polyphosphate kinase 1 | |||
| 183 | hydroxyethylthiazole kinase | |||
| ??? | R | HpyIN5ORF4075P (100% identity) | HpyKH30ORFMP | |
| 188 | S | S.HpyIN5ORF4075P (100% identity) | S.HpyKH30ORFMP | |
| ??? | M | M.HpyIN5ORF4075P (95% identity) | M.HpyKH30ORFMP | |
| 195 | 68 aa hypothetical protein 1_17C_ICEHptfs4b_14 | |||
| 234 | M48 family peptidase | |||
| 237 | R | HpyIN5ORF7220P (99% identity) | HpyKH30ORFKP | |
| ??? | M | M.HpyIN5ORF7220P (100% identity) | M.HpyKH30ORFKP | |
| 242 | S | S.HpyIN5ORF7220P (100% identity) | S.HpyKH30ORFKP | |
| 243 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyIN5III (100% identity) | ATTAAT | M.HpyKH30ORFXP |
| 2 | modification methylase VspI domain protein | |||
| 5 | 112 aa hypothetical protein | |||
| 6 | M | M.HpyIN5II (100% identity) | ACNGT | M.HpyKH30ORFYP |
| 7 | R | HpyIN5IIP (100% identity) | ACNGT | HpyKH30ORFYP |
| 9 | DNA cytosine methyltransferase | |||
| 7 | GIY-YIG nuclease family protein | |||
| 9 | M | M.HpyIN5ORF2240P (100% identity) | ACGT | M.HpyKH30ORFZP |
| ??? | R | HpyIN5ORF2240P (100% identity) | ACGT | HpyKH30ORFZP |
| 14 | 65 aa hypothetical protein HPOKI128_02415 | |||
| 10 | S41 family peptidase | |||
| ??? | R | HpyIN5ORF6390P (100% identity) | HpyKH30ORFVP | |
| ??? | M | M.HpyIN5ORF6390P (100% identity) | M.HpyKH30ORFVP | |
| 16 | adenine specific DNA methyltransferase | |||
| 7 | HrgA protein, partial | |||
| 9 | M | M.HpyIN5VIII (100% identity) | GATC | M.HpyKH30ORFGP |
| 10 | alpha-1,2-fucosyltransferase | |||
| ??? | hypothetical protein | |||
| 16 | RM | HpyPE05ORF6620P (29% identity) | HpyKH30ORFWBP | |
| 17 | RM | HpyIN5ORF6405P (71% identity) | HpyKH30ORFWAP | |
| 18 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 17 | DNA topoisomerase subunit B | |||
| 18 | M | M.Hpy99XII (96% identity) | GTAC | M.HpyKH30ORFRP |
| ??? | R | HpyIN5ORF2345P (95% identity) | GTAC | HpyKH30ORFRP |
| 22 | metalloendopeptidase like protein | |||
| 37 | 91 aa hypothetical protein | |||
| 38 | M | M.HpyIN5XIII (98% identity) | GCGC | M.HpyKH30ORFFP |
| 39 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 23 | Laminin subunit alpha-2 precursor | |||
| 26 | R | HpyPU007ORF4965P (61% identity) | TCNNGA | HpyKH30ORFEP |
| 27 | M | M.HpyKH12ORFFP (100% identity) | TCNNGA | M.HpyKH30ORFEP |
| 28 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 16 | ATP-dependent helicase | |||
| 18 | M | M.HpyIN5IX (93% identity) | GTNNAC | M.HpyKH30ORFCP |
| 19 | R | HpyIN5IXP (100% identity) | GTNNAC | HpyKH30ORFCP |
| 20 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 29 | DNA-binding response regulator | |||
| 30 | R | HpyIN5VIIP (98% identity) | GAAGA | HpyKH30ORFTP |
| 31 | M | M1.HpyIN5VII (100% identity) | GAAGA | M1.HpyKH30ORFTP |
| 32 | M | M2.HpyIN5VII (95% identity) | GAAGA | M2.HpyKH30ORFTP |
| 33 | site-specific DNA-methyltransferase | |||
| 49 | sodium/proline symporter | |||
| 50 | R | HpyIN5VP (97% identity) | CCTC | HpyKH30ORFLP |
| 51 | DNA methyltransferase | |||
| 52 | M | M2.HpyIN5VP (100% identity) | CCTC | M2.HpyKH30ORFLP |
| 55 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 50 | exodeoxyribonuclease VII large subunit | |||
| 51 | M | M.HpyIN5X (100% identity) | TCGA | M.HpyKH30ORFOP |
| 52 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 53 | 88 aa hypothetical protein | |||
| 54 | R | HpyIN5IVP (93% identity) | CCGG | HpyKH30ORFPP |
| 55 | M | M.HpyIN5IV (100% identity) | CCGG | M.HpyKH30ORFPP |
| 56 | chaperone protein ClpB | |||
| 61 | HAD family hydrolase | |||
| 62 | M | M.HpyIN5I (100% identity) | CATG | M.HpyKH30ORFBP |
| 63 | ulcer-associated gene restriction endonuclease | |||
| 80 | outer membrane protein | |||
| 82 | RM | helicase | HpyKH30ORFQBP | |
| 84 | RM | HpyIN5ORF3200P (89% identity) | HpyKH30ORFQAP | |
| 88 | -binding protein | |||
| 130 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 131 | R | HpyKH9ORFCP (99% identity) | CTNAG | HpyKH30ORFAP |
| 133 | M | M.HpyIN5VI (100% identity) | CTNAG | M.HpyKH30ORFAP |
| 134 | uncharacterized protein | |||
| 204 | cytochrome c1 | |||
| 205 | R | HpyIN5XIIP (100% identity) | TGCA | HpyKH30ORFDP |
| 207 | M | M.HpyIN5XII (100% identity) | TGCA | M.HpyKH30ORFDP |
| 208 | 68 aa hypothetical protein | |||
| 264 | 970 aa hypothetical protein | |||
| 267 | RM | HpyIN5XV (100% identity) | HpyKH30ORFJP | |
| 269 | 65 aa hypothetical protein | |||
| 333 | ComF family protein | |||
| 335 | R | HpyIN5ORF6905P (98% identity) | HpyKH30ORFHP | |
| ??? | M | M2.HpyIN5ORF6905P (100% identity) | M1.HpyKH30ORFHP | |
| 338 | M | M2.HpyU303IX (100% identity) | M2.HpyKH30ORFHP | |
| 339 | transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | DUF1887 family protein | |||
| 33 | M | M.HpyIN5XIV (100% identity) | M.HpyKH30ORFUP | |
| 34 | R | HpyIN5XIVP (100% identity) | HpyKH30ORFUP | |
| 36 | 66 aa hypothetical protein | |||
| 53 | DNA/RNA non-specific endonuclease | |||
| 54 | M | M.HpyIN5ORF6540P (100% identity) | M.HpyKH30ORFSP | |
| 55 | R | HpyIN5ORF6540P (98% identity) | HpyKH30ORFSP | |
| 259 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyIN5ORF7145P (100% identity) | M.HpyKH30ORFIP | |
| 264 | R | HpyIN5ORF7145P (100% identity) | HpyKH30ORFIP | |
| 267 | class I SAM-dependent DNA methyltransferase | |||