Helicobacter pylori KH23 |
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Putative Helicobacter pylori KH23 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,651,818 bp
GenBank #: PHMB00000000 (NZ_PHMB00000000)
REBASE acronym: HpyKH23
Org_num: 31855
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyL024ORF6730P (94% identity) | S.HpyKH23ORFE1P | |
| 1 | S | S.HpyBG5ORF7730P (65% identity) | S.HpyKH23ORFG1P | |
| 2 | DNA polymerase I | |||
| 18 | 631 aa hypothetical protein U063_1207 | |||
| ??? | R | HpyF019ORF2320P (92% identity) | HpyKH23ORFC1P | |
| 22 | M | M.HpyNP07ORF2180P (95% identity) | M.HpyKH23ORFC1P | |
| 23 | S | S.HpyC106ORF2140P (98% identity) | S.HpyKH23ORFC1P | |
| 83 | DNA cytosine methyltransferase | |||
| ??? | M | M.HpyJO8ORF4020P (64% identity) | M.HpyKH23ORFIP | |
| 86 | S | S.HpyKH39ORFVP (64% identity) | S.HpyKH23ORFIP | |
| 87 | R | HpyGE13ORF3895P (92% identity) | HpyKH23ORFIP | |
| 90 | hydroxyethylthiazole kinase | |||
| 107 | M48 family peptidase | |||
| 110 | R | HpyNP02ORF7250P (94% identity) | HpyKH23ORFEP | |
| 112 | M | M.HpyU101ORF7215P (95% identity) | M.HpyKH23ORFEP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | R | CfrBI family restriction endonuclease | HpyKH23ORFF1P | |
| 1 | type II restriction endonuclease | |||
| 2 | RM | HpyUM067ORF4405P (95% identity) | HpyKH23ORFFP | |
| 3 | ComF family protein | |||
| 1 | M | M.HpyT008II (96% identity) | ATTAAT | M.HpyKH23ORFSP |
| 2 | modification methylase VspI domain protein | |||
| 1 | M | M.HpyP109IV (99% identity) | CCNNGG | M.HpyKH23ORFD1P |
| 2 | R | CfrBI family restriction endonuclease | CCNNGG | HpyKH23ORFD1P |
| 4 | 162 aa hypothetical protein | |||
| 5 | M | M.HpyNCI53IX (97% identity) | ACNGT | M.HpyKH23ORFTP |
| 6 | R | HpyBGR4ORF2360P (79% identity) | ACNGT | HpyKH23ORFTP |
| 8 | DNA cytosine methyltransferase | |||
| 6 | GIY-YIG nuclease family protein | |||
| 8 | M | M.HpySP803ORF1420P (98% identity) | ACGT | M.HpyKH23ORFUP |
| 9 | R | HpyC210ORF2225P (99% identity) | ACGT | HpyKH23ORFUP |
| 10 | catalase family peroxidase | |||
| 7 | 327 aa hypothetical protein | |||
| 10 | M | M.HpyPU009VIII (97% identity) | GATC | M.HpyKH23ORFHP |
| 11 | alpha-1,2-fucosyltransferase | |||
| 19 | exodeoxyribonuclease VII large subunit | |||
| 20 | M | M.HpyKH25ORFIP (99% identity) | TCGA | M.HpyKH23ORFKP |
| 21 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 26 | outer membrane protein | |||
| ??? | RM | HpyL021ORF3355P (84% identity) | HpyKH23ORFB1P | |
| 31 | -binding protein | |||
| 21 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 22 | R | HpyGRE042IVP (91% identity) | CCGG | HpyKH23ORFLP |
| 23 | M | M.HpyU406III (98% identity) | CCGG | M.HpyKH23ORFLP |
| 24 | chaperone protein ClpB | |||
| 36 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 37 | M | M.HpySP11X (96% identity) | GCGC | M.HpyKH23ORFBP |
| 38 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 16 | ATP-dependent helicase | |||
| 18 | M | M.HpySP709IX (92% identity) | GTNNAC | M.HpyKH23ORFGP |
| 19 | R | HpySWT15XIP (92% identity) | GTNNAC | HpyKH23ORFGP |
| 20 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 35 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 36 | M | M1.HpyNP02V (96% identity) | CCTC | M1.HpyKH23ORFQP |
| 38 | M | M2.HpyK047IVP (98% identity) | CCTC | M2.HpyKH23ORFQP |
| 39 | R | HpyP30ORFMP (94% identity) | CCTC | HpyKH23ORFQP |
| 40 | sodium/proline symporter | |||
| 32 | DNA topoisomerase subunit B | |||
| 35 | M | M.HpyB128KORF6500P (97% identity) | GTAC | M.HpyKH23ORFRP |
| 36 | R | HpyKH1ORFQP (98% identity) | GTAC | HpyKH23ORFRP |
| 37 | metalloendopeptidase like protein | |||
| 47 | penicillin-binding protein 2 | |||
| 48 | M | M.HpyKH9ORFHP (99% identity) | M.HpyKH23ORFDP | |
| 49 | 366 aa hypothetical protein | |||
| 37 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyH002ORF6505P (91% identity) | HpyKH23ORFWP | |
| 41 | site-specific DNA-methyltransferase | |||
| ??? | hypothetical protein | |||
| 41 | M | M.HpyKH33ORFSP (99% identity) | GANTC | M.HpyKH23ORFYP |
| 42 | R | HpyI019IVP (97% identity) | GANTC | HpyKH23ORFYP |
| 43 | S41 family peptidase | |||
| 45 | serine acetyltransferase | |||
| ??? | R | HpyPE124IP (94% identity) | CATG | HpyKH23ORFNP |
| 52 | M | M.HpyLI06I (98% identity) | CATG | M.HpyKH23ORFNP |
| 53 | HAD family hydrolase | |||
| 52 | Laminin subunit alpha-2 precursor | |||
| ??? | R | HpySP05ORF2530P (98% identity) | HpyKH23ORFVP | |
| ??? | M | M.HpyMA05ORF5200P (96% identity) | M.HpyKH23ORFVP | |
| 59 | 177 aa hypothetical protein HMPREF1397_00627 | |||
| 69 | DUF4065 domain-containing protein | |||
| ??? | RM | HpyFD662ORF415P (91% identity) | HpyKH23ORFOP | |
| 73 | 969 aa hypothetical protein | |||
| 82 | cytochrome c1 | |||
| ??? | R | HpyKH18ORFFP (99% identity) | TGCA | HpyKH23ORFMP |
| 85 | M | M.HpyKH18ORFFP (99% identity) | TGCA | M.HpyKH23ORFMP |
| 86 | 68 aa hypothetical protein | |||
| 81 | 68 aa hypothetical protein HPHPM6_1194 | |||
| 82 | R | HpyMA02ORF2280P (98% identity) | HpyKH23ORFJP | |
| 83 | M | M.HpyKH37ORFB1P (99% identity) | M.HpyKH23ORFJP | |
| 84 | type I restriction-modification system subunit M | |||
| 108 | phosphopentomutase | |||
| 110 | R | HpyF17I (99% identity) | TCNGA | HpyKH23ORFCP |
| 112 | M | M.HpyR02XIII (98% identity) | TCNGA | M.HpyKH23ORFCP |
| 113 | 91 aa hypothetical protein HMPREF1406_00819 | |||
| 97 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 98 | R | Hpy280AORFFP (99% identity) | CTNAG | HpyKH23ORFAP |
| 100 | M | M.HpyU009IV (100% identity) | CTNAG | M.HpyKH23ORFAP |
| 101 | uncharacterized protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | R | HpyCOL204ORF6325P (91% identity) | HpyKH23ORFA1P | |
| 3 | M | M.HpyR11ORF6850P (96% identity) | M.HpyKH23ORFA1P | |
| 4 | DNA/RNA non-specific endonuclease | |||
| 22 | rod shape-determining MreC family protein | |||
| 23 | R | HpySP104ORF6610P (92% identity) | HpyKH23ORFZP | |
| 25 | M | M.HpyC212ORF7620P (91% identity) | M.HpyKH23ORFZP | |
| 26 | DNA-binding response regulator | |||
| ??? | hypothetical protein | |||
| 73 | R | HpySP302ORF7335P (93% identity) | HpyKH23ORFPP | |
| ??? | M | M.HpyNCI55ORFUP (96% identity) | M.HpyKH23ORFPP | |
| 80 | ATP-dependent DNA helicase | |||