Helicobacter pylori KH22 |
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Putative Helicobacter pylori KH22 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,592,933 bp
GenBank #: PHMC00000000 (NZ_PHMC00000000)
REBASE acronym: HpyKH22
Org_num: 31854
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyMA02ORF7510P (96% identity) | M.HpyKH22ORFJP | |
| 3 | R | HpyKH34ORFOP (95% identity) | HpyKH22ORFJP | |
| 4 | M48 family peptidase | |||
| 20 | 631 aa hypothetical protein U063_1207 | |||
| 21 | R | HpyIS7ORF3750P (90% identity) | HpyKH22ORFEP | |
| 22 | M | M.Hpy12SORF1216P (96% identity) | M.HpyKH22ORFEP | |
| 23 | S | S.HpyBS06ORF5275P (97% identity) | S.HpyKH22ORFEP | |
| 24 | polyphosphate kinase 1 | |||
| 44 | 59 aa hypothetical protein HPNQ4200_0926 | |||
| 45 | M | M.HpyMA16XV (95% identity) | M.HpyKH22ORFMP | |
| 46 | S | S.HpyKH44ORFMP (48% identity) | S.HpyKH22ORFMP | |
| 47 | R | HpyKH14ORFLP (95% identity) | HpyKH22ORFMP | |
| 50 | hydroxyethylthiazole kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12 | S41 family peptidase | |||
| ??? | R | HpyKH15ORFB1P (97% identity) | HpyKH22ORFD1P | |
| 16 | M | M.HpyNAB47ORFCP (98% identity) | M.HpyKH22ORFD1P | |
| 17 | adenine specific DNA methyltransferase 2 domain protein | |||
| 7 | ATP-dependent helicase | |||
| 8 | M | M.HpyFD423ORFNP (96% identity) | M.HpyKH22ORFIP | |
| 9 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 24 | -binding protein | |||
| 25 | RM | HpyKH39ORFTAP (63% identity) | HpyKH22ORFA1AP | |
| 28 | RM | HpyKH31ORFEP (49% identity) | HpyKH22ORFA1BP | |
| 29 | outer membrane protein | |||
| 23 | class I SAM-dependent DNA methyltransferase | |||
| 24 | RM | HpyKH9ORFNP (83% identity) | HpyKH22ORFRP | |
| 25 | transcription termination/antitermination protein NusA | |||
| 38 | 62 aa hypothetical protein | |||
| 39 | M | M.HpyMA02XI (96% identity) | M.HpyKH22ORFC1P | |
| 40 | R | Hpyoh1ORF495P (69% identity) | HpyKH22ORFC1P | |
| 41 | 154 aa hypothetical protein HMPREF1427_00277 | |||
| 32 | DNA -methyltransferase | |||
| ??? | M | M.HpyMM03X (95% identity) | M.HpyKH22ORFWP | |
| ??? | R | HpyUM084ORF5810P (92% identity) | HpyKH22ORFWP | |
| 41 | lipopolysaccharide heptosyltransferase family protein | |||
| 29 | metalloendopeptidase like protein | |||
| 30 | R | HpyKH4ORFAP (96% identity) | HpyKH22ORFDP | |
| 31 | M | M.HpyKH3ORFTP (97% identity) | M.HpyKH22ORFDP | |
| 32 | DNA topoisomerase subunit B | |||
| 31 | 68 aa hypothetical protein | |||
| 32 | M | M.HpyP107ORF6850P (99% identity) | M.HpyKH22ORFB1P | |
| ??? | R | HpyU005ORF6500P (99% identity) | HpyKH22ORFB1P | |
| 35 | glycosyltransferase family 8 protein | |||
| 44 | lipopolysaccharide heptosyltransferase family protein | |||
| 45 | M | M2.HpyMA17V (95% identity) | GAAGA | M1.HpyKH22ORFXP |
| 46 | M | M1.HpyMM10VI (94% identity) | M2.HpyKH22ORFXP | |
| 47 | R | HpyIS4VIP (98% identity) | GAAGA | HpyKH22ORFXP |
| 48 | DNA-binding response regulator | |||
| 42 | Laminin subunit alpha-2 precursor | |||
| 45 | R | HpyBG1XIP (98% identity) | TCNNGA | HpyKH22ORFCP |
| 46 | M | M.HpyK114XIV (99% identity) | TCNNGA | M.HpyKH22ORFCP |
| 47 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 54 | 3'-5' exonuclease | |||
| 55 | M | M.HpyMA25ORF3330P (98% identity) | M.HpyKH22ORFZP | |
| 56 | R | HpyKH43ORFDP (100% identity) | HpyKH22ORFZP | |
| 59 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyFD719ORF7345P (70% identity) | HpyKH22ORFHP | |
| 55 | catalase family peroxidase | |||
| 56 | M | M.HpyUM067ORF8490P (45% identity) | M.HpyKH22ORFSP | |
| 57 | GIY-YIG nuclease family protein | |||
| 56 | DNA cytosine methyltransferase | |||
| 57 | R | HpyKH37ORFD1P (97% identity) | HpyKH22ORFTP | |
| 59 | M | M.HpyKH45ORFA1P (86% identity) | M.HpyKH22ORFTP | |
| 60 | translational GTPase TypA | |||
| 62 | modification methylase VspI domain protein | |||
| 63 | M | M.Hpy2099ORF2370P (97% identity) | ATTAAT | M.HpyKH22ORFUP |
| 87 | ComF family protein | |||
| ??? | RM | HpyFD662ORF165P (98% identity) | HpyKH22ORFE1P | |
| ??? | S | S.HpyKH36ORFPP (96% identity) | S.HpyKH22ORFE1P | |
| 95 | DNA polymerase I | |||
| 109 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 110 | M | M1.HpyUM067ORF675P (97% identity) | M1.HpyKH22ORFOP | |
| 112 | M | M2.HpyKH15ORFPP (98% identity) | CCTC | M2.HpyKH22ORFOP |
| 113 | R | HpyKH15ORFPP (100% identity) | CCTC | HpyKH22ORFOP |
| 114 | 419 aa hypothetical protein | |||
| 113 | restriction endonuclease | |||
| 114 | R | HpyL019IXP (98% identity) | CCTTC | HpyKH22ORFPP |
| 115 | M | M.HpyLI32V (98% identity) | CCTTC | M.HpyKH22ORFPP |
| 117 | sodium/proline symporter | |||
| 136 | 153 aa hypothetical protein HMPREF1411_00627 | |||
| 137 | M | M.HpyMM09ORF1685P (99% identity) | M.HpyKH22ORFFP | |
| 138 | Translation elongation factor LepA | |||
| 193 | serine acetyltransferase | |||
| 196 | R | ulcer-associated gene restriction endonuclease | CATG | HpyKH22ORFNP |
| 199 | M | M.HpyUM067ORF5365P (98% identity) | CATG | M.HpyKH22ORFNP |
| 200 | HAD family hydrolase | |||
| 177 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 178 | R | HpyMA16IIP (97% identity) | HpyKH22ORFAP | |
| 179 | M | M2.HpyKH32ORFJP (96% identity) | M.HpyKH22ORFAP | |
| 180 | alpha-1,2-fucosyltransferase | |||
| 179 | uncharacterized protein | |||
| 180 | M | M.HpyMM11VII (100% identity) | CTNAG | M.HpyKH22ORFGP |
| 181 | R | HpyKH15ORFAP (99% identity) | CTNAG | HpyKH22ORFGP |
| 182 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 252 | chaperone protein ClpB | |||
| 255 | M | M.HpySP701III (99% identity) | CCGG | M.HpyKH22ORFKP |
| 256 | R | HpyLI08VIIP (90% identity) | CCGG | HpyKH22ORFKP |
| 257 | 132 aa hypothetical protein HMPREF1392_01214 | |||
| 257 | 132 aa hypothetical protein HMPREF1392_01214 | |||
| 258 | M | M.HpySW13VI (98% identity) | TCGA | M.HpyKH22ORFLP |
| 259 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7 | biotin synthase | |||
| 9 | R | HpyKH4ORFPP (94% identity) | HpyKH22ORFYP | |
| 10 | M | M.HpyKH10ORFC1P (95% identity) | M.HpyKH22ORFYP | |
| 11 | DNA/RNA non-specific endonuclease | |||
| 15 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyNP01ORF6955P (96% identity) | M.HpyKH22ORFQP | |
| 20 | R | HpyUM067ORF4640P (95% identity) | HpyKH22ORFQP | |
| 22 | 712 aa hypothetical protein | |||
| 16 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 17 | R | HpyKH40ORFDP (96% identity) | HpyKH22ORFBP | |
| 18 | M | M.HpyMM03XVIII (97% identity) | M.HpyKH22ORFBP | |
| 19 | 83 aa hypothetical protein HMPREF1403_00513 | |||
| 29 | 66 aa hypothetical protein | |||
| 30 | R | HpyKH11ORFXP (95% identity) | HpyKH22ORFVP | |
| 32 | M | M.HpyNP08ORF6475P (95% identity) | M.HpyKH22ORFVP | |
| 33 | Dam family site-specific DNA--methyltransferase | |||