Helicobacter pylori KH19 |
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Putative Helicobacter pylori KH19 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,656,470 bp
GenBank #: PHMF00000000 (NZ_PHMF00000000)
REBASE acronym: HpyKH19
Org_num: 31851
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyL019ORF2170P (98% identity) | S.HpyKH19ORFG1P | |
| 2 | M | M.HpyBS06ORF5275P (95% identity) | M.HpyKH19ORFG1P | |
| ??? | R | HpyLIM2IIIP (92% identity) | HpyKH19ORFG1P | |
| 6 | 631 aa hypothetical protein U063_1207 | |||
| 1 | S | S.Hpyfe125ORF4195P (96% identity) | S.HpyKH19ORFKP | |
| 2 | M | M.HpyNP10ORF2920P (87% identity) | M.HpyKH19ORFKP | |
| 3 | 68 aa hypothetical protein 1_17C_ICEHptfs4b_14 | |||
| 1 | 258 aa unknown | |||
| ??? | M | M.HpyBG7ORF7610P (99% identity) | M.HpyKH19ORFLP | |
| ??? | R | HpyBG7ORF7610P (98% identity) | HpyKH19ORFLP | |
| 7 | M48 family peptidase | |||
| 145 | outer membrane beta-barrel protein HofF | |||
| 146 | S | S.HpyBG7X (67% identity) | S.HpyKH19ORFNP | |
| 147 | cadmium-translocating P-type ATPase | |||
| 232 | hydroxyethylthiazole kinase | |||
| 233 | R | HpyG019XIIIP (96% identity) | HpyKH19ORFTP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | 3'-5' exonuclease | |||
| 2 | M | M.HpyP109IV (100% identity) | CCNNGG | M.HpyKH19ORFCP |
| 3 | R | HpyBG7IIIP (100% identity) | CCNNGG | HpyKH19ORFCP |
| 4 | 3'-5' exonuclease | |||
| 1 | M | M.Hpy478AORFVP (97% identity) | ATTAAT | M.HpyKH19ORFB1P |
| 2 | modification methylase VspI domain protein | |||
| 5 | 112 aa hypothetical protein | |||
| 6 | M | M.HpySP504II (99% identity) | ACNGT | M.HpyKH19ORFC1P |
| 7 | R | HpyL019VIP (99% identity) | ACNGT | HpyKH19ORFC1P |
| 9 | DNA cytosine methyltransferase | |||
| 7 | GIY-YIG nuclease family protein | |||
| 9 | M | M.HpyI006ORF3940P (95% identity) | M.HpyKH19ORFD1P | |
| 10 | catalase family peroxidase | |||
| 5 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 7 | R | HpyISR5XIIP (100% identity) | HpyKH19ORFJP | |
| 8 | M | M.HpyBG7XII (98% identity) | M.HpyKH19ORFJP | |
| 9 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 16 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 17 | M | M.HpyKH41ORFXP (99% identity) | TCNNGA | M.HpyKH19ORFIP |
| 18 | R | HpyUSU101ORF5545P (100% identity) | TCNNGA | HpyKH19ORFIP |
| 19 | Laminin subunit alpha-2 precursor | |||
| 27 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | HpyBG7ORF6985P (100% identity) | GAATTC | HpyKH19ORFE1P |
| 30 | M | M.HpyBG7ORF6985P (99% identity) | GAATTC | M.HpyKH19ORFE1P |
| 31 | glycosyltransferase family 8 protein | |||
| 19 | 5'-nucleotidase protein | |||
| 21 | M | M.HpyBG7XIV (100% identity) | M.HpyKH19ORFF1P | |
| 22 | restriction endonuclease | |||
| 25 | 737 aa hypothetical protein | |||
| 26 | RM | HpyP108ORF6825P (90% identity) | HpyKH19ORFQP | |
| 28 | DUF4065 domain-containing protein | |||
| 25 | 100 aa hypothetical protein | |||
| 26 | RM | DEAD/DEAH box helicase | HpyKH19ORFA1AP | |
| 28 | RM | HpyLI06ORF3295P (71% identity) | HpyKH19ORFA1BP | |
| 30 | MBL fold metallo-hydrolase | |||
| 29 | 68 aa hypothetical protein | |||
| 30 | M | M.HpyBG7IX (97% identity) | TGCA | M.HpyKH19ORFDP |
| 32 | R | type II restriction endonuclease | TGCA | HpyKH19ORFDP |
| 33 | cytochrome c1 | |||
| 30 | ATP-dependent helicase | |||
| 31 | M | M.HpyU419IX (92% identity) | GTNNAC | M.HpyKH19ORFGP |
| 32 | R | HpyLI08IIP (95% identity) | GTNNAC | HpyKH19ORFGP |
| 33 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 48 | 60 aa hypothetical protein | |||
| 49 | R | HpyI012IIP (91% identity) | CCGG | HpyKH19ORFBP |
| 50 | M | M.HpyMA25III (99% identity) | CCGG | M.HpyKH19ORFBP |
| 51 | chaperone protein ClpB | |||
| 50 | outer membrane protein | |||
| ??? | R | HpyPE105IVP (86% identity) | HpyKH19ORFUP | |
| 54 | restriction endonuclease NgoFVII | |||
| 68 | metalloendopeptidase like protein | |||
| 69 | R | HpyH012IVP (96% identity) | GTAC | HpyKH19ORFFP |
| 70 | M | M.HpyKH38ORFRP (98% identity) | GTAC | M.HpyKH19ORFFP |
| 71 | DNA topoisomerase subunit B | |||
| 70 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyIN6ORF6590P (86% identity) | HpyKH19ORFWP | |
| 73 | lipopolysaccharide heptosyltransferase family protein | |||
| 78 | 77 aa hypothetical protein | |||
| ??? | M | M.HpyBG7ORF6755P (100% identity) | M.HpyKH19ORFZP | |
| 81 | R | HpyBG7ORF6755P (100% identity) | HpyKH19ORFZP | |
| 82 | IS200/IS605 family transposase | |||
| 97 | ComF family protein | |||
| 99 | RM | HpyPO102ORF7085P (98% identity) | HpyKH19ORFVP | |
| 100 | S | S.Hpyfe82ORF290P (59% identity) | S.HpyKH19ORFVP | |
| 101 | DNA polymerase I | |||
| 126 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| ??? | R | HpyKH18ORFAP (98% identity) | HpyKH19ORFMP | |
| 129 | M | M.HpyBG7V (93% identity) | M.HpyKH19ORFMP | |
| 130 | uncharacterized protein | |||
| 199 | 59 aa hypothetical protein | |||
| 200 | M | M.HpyKH25ORFBP (97% identity) | CATG | M.HpyKH19ORFAP |
| 201 | HAD family hydrolase | |||
| 179 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 180 | M | M1.HpySWT13VIII (97% identity) | CCTC | M1.HpyKH19ORFRP |
| 182 | M | M2.HpyNAD1ORFAP (99% identity) | CCTC | M2.HpyKH19ORFRP |
| 183 | sodium/proline symporter | |||
| 241 | HrgA protein | |||
| 244 | M | M.HpyIS7VIII (97% identity) | GATC | M.HpyKH19ORFEP |
| 245 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17 | ATP-dependent DNA helicase | |||
| ??? | M | M.Hpy173ORF6035P (96% identity) | M.HpyKH19ORFPP | |
| 21 | R | HpyKH18ORFRP (99% identity) | HpyKH19ORFPP | |
| 24 | 60 aa hypothetical protein | |||
| 14 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 15 | R | HpySP802ORF2620P (96% identity) | HpyKH19ORFHP | |
| 16 | M | M.HpyBG7XIII (100% identity) | M.HpyKH19ORFHP | |
| 18 | 79 aa hypothetical protein HMPREF1403_00513 | |||
| 32 | biotin synthase | |||
| 34 | R | Hpy478AORFKP (89% identity) | HpyKH19ORFOP | |
| 35 | M | M.HpyBG7ORF6915P (99% identity) | M.HpyKH19ORFOP | |
| 37 | DNA/RNA non-specific endonuclease | |||
| 54 | 66 aa hypothetical protein | |||
| 55 | R | HpyKH41ORFVP (96% identity) | HpyKH19ORFSP | |
| ??? | M | M.HpyKH41ORFVP (94% identity) | M.HpyKH19ORFSP | |
| 59 | DNA-binding response regulator | |||