Helicobacter pylori KH15 |
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Putative Helicobacter pylori KH15 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,608,987 bp
GenBank #: PHMJ00000000 (NZ_PHMJ00000000)
REBASE acronym: HpyKH15
Org_num: 31844
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | S | S.HpyIN1IV (42% identity) | S.HpyKH15ORFXP | |
| 2 | M | M.HpyIN1IV (100% identity) | M.HpyKH15ORFXP | |
| 3 | 59 aa hypothetical protein HPHPM6_1194 | |||
| 1 | R | HpyIN1IVP (100% identity) | HpyKH15ORFWP | |
| 4 | hydroxyethylthiazole kinase | |||
| 33 | cadmium-translocating P-type ATPase | |||
| ??? | S | S.HpyIN1XIII (45% identity) | S.HpyKH15ORFYP | |
| 21 | 59 aa hypothetical protein HPHPP2_1724 | |||
| 22 | S | S.HpyIN1XII (100% identity) | S.HpyKH15ORFSP | |
| 23 | 98 aa unknown | |||
| 24 | 67 aa hypothetical protein | |||
| 25 | 134 aa unknown | |||
| ??? | M | M.HpyIN1XII (100% identity) | M.HpyKH15ORFSP | |
| 28 | R | HpyIN1XIIP (98% identity) | HpyKH15ORFSP | |
| 29 | M48 family peptidase | |||
| 413 | polyphosphate kinase 1 | |||
| 414 | S | S.HpyIN1ORF2005P (100% identity) | S.HpyKH15ORFLP | |
| ??? | M | M.HpyIN1ORF2005P (100% identity) | M.HpyKH15ORFLP | |
| ??? | R | HpyIN1ORF2005P (100% identity) | HpyKH15ORFLP | |
| 422 | 631 aa hypothetical protein U063_1207 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | RM | HpyIN1ORF5710P (100% identity) | HpyKH15ORFTP | |
| 2 | 95 aa hypothetical protein | |||
| 7 | ATP-dependent helicase | |||
| 9 | M | M.HpyIN1IX (97% identity) | M.HpyKH15ORFHP | |
| 10 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 11 | S41 family peptidase | |||
| ??? | R | HpyKH27ORFXP (98% identity) | HpyKH15ORFB1P | |
| 14 | M | M.HpyNAB47ORFCP (98% identity) | M.HpyKH15ORFB1P | |
| 15 | DNA methyltransferase | |||
| 11 | serine acetyltransferase | |||
| 14 | R | HpyIN1IP (100% identity) | CATG | HpyKH15ORFVP |
| 19 | M | M.HpyIN1I (100% identity) | CATG | M.HpyKH15ORFVP |
| 20 | HAD family hydrolase | |||
| 13 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| ??? | RM | HpyIN1ORF6105P (57% identity) | HpyKH15ORFC1P | |
| 37 | 91 aa hypothetical protein | |||
| 38 | M | M.HpyIN1XI (98% identity) | M.HpyKH15ORFCP | |
| 39 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 30 | metalloendopeptidase like protein | |||
| 31 | R | HpyIN1ORF4130P (98% identity) | HpyKH15ORFFP | |
| 32 | 69 aa hypothetical protein N206_05345 | |||
| 52 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 53 | M | M1.HpyIN1VI (100% identity) | CCTC | M1.HpyKH15ORFPP |
| 55 | M | M2.HpyIN1VIP (100% identity) | CCTC | M2.HpyKH15ORFPP |
| 56 | R | HpyKH22ORFOP (100% identity) | CCTC | HpyKH15ORFPP |
| 57 | DNA cytosine methyltransferase | |||
| 65 | ComF family protein | |||
| 67 | RM | HpyIN1ORF5485P (100% identity) | HpyKH15ORFRP | |
| 68 | S | S.HpyIN1ORF5485P (100% identity) | S.HpyKH15ORFRP | |
| 69 | DNA polymerase I | |||
| 66 | outer membrane protein | |||
| 67 | RM | restriction endonuclease | HpyKH15ORFOBP | |
| 68 | RM | HpyIN1ORF3320P (66% identity) | HpyKH15ORFOAP | |
| 71 | -binding protein | |||
| 55 | 68 aa hypothetical protein | |||
| 56 | M | M.HpyIN1ORF5900P (100% identity) | M.HpyKH15ORFDP | |
| 57 | 204 aa hypothetical protein | |||
| 56 | DNA cytosine methyltransferase | |||
| 57 | R | HpyIN1ORF5900P (100% identity) | HpyKH15ORFEP | |
| 58 | glycosyltransferase family 8 protein | |||
| 75 | 177 aa hypothetical protein HMPREF1397_00627 | |||
| ??? | M | M.HpyIN1ORF5005P (100% identity) | M.HpyKH15ORFQP | |
| 78 | R | HpyIN1ORF5005P (100% identity) | TCNNGA | HpyKH15ORFQP |
| 80 | Laminin subunit alpha-2 precursor | |||
| 128 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 129 | R | HpyIN1VIIIP (100% identity) | GATC | HpyKH15ORFBP |
| 130 | M | M.HpyIN1VIII (100% identity) | GATC | M.HpyKH15ORFBP |
| 131 | alpha-1,2-fucosyltransferase | |||
| 168 | exodeoxyribonuclease VII large subunit | |||
| 169 | M | M.HpyIN1X (98% identity) | TCGA | M.HpyKH15ORFMP |
| 170 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 170 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 171 | R | HpyIN1VP (93% identity) | CCGG | HpyKH15ORFNP |
| 172 | M | M.HpyIN1V (100% identity) | CCGG | M.HpyKH15ORFNP |
| 173 | chaperone protein ClpB | |||
| 244 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 245 | R | HpyKH22ORFGP (99% identity) | CTNAG | HpyKH15ORFAP |
| 246 | M | M.HpyMM11VII (100% identity) | CTNAG | M.HpyKH15ORFAP |
| 247 | uncharacterized protein | |||
| 438 | 369 aa hypothetical protein HPSA_04470 | |||
| 439 | M | M.HpyIN1III (100% identity) | ATTAAT | M.HpyKH15ORFIP |
| 440 | modification methylase VspI domain protein | |||
| 442 | 162 aa hypothetical protein | |||
| 443 | M | M.HpyIN1II (100% identity) | ACNGT | M.HpyKH15ORFJP |
| 444 | R | HpyIN1ORF2100P (79% identity) | ACNGT | HpyKH15ORFJP |
| 446 | DNA cytosine methyltransferase | |||
| 444 | GIY-YIG nuclease family protein | |||
| 446 | M | M.HpyIN1ORF2110P (100% identity) | ACGT | M.HpyKH15ORFKP |
| 447 | R | HpyIN1ORF2110P (78% identity) | ACGT | HpyKH15ORFKP |
| 449 | 82 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.HpyIN1ORF6045P (57% identity) | M.HpyKH15ORFGP | |
| 2 | DNA-binding response regulator | |||
| 1 | R | HpyIN1ORF5980P (96% identity) | HpyKH15ORFA1P | |
| 2 | M | M.HpyIN1ORF5980P (100% identity) | M.HpyKH15ORFA1P | |
| 3 | DNA/RNA non-specific endonuclease | |||
| 2 | 95 aa hypothetical protein | |||
| 3 | R | HpyIN1ORF5730P (100% identity) | HpyKH15ORFUP | |
| 6 | M | M.HpyIN1ORF5730P (100% identity) | M.HpyKH15ORFUP | |
| 7 | ATP-dependent DNA helicase | |||
| 20 | 66 aa hypothetical protein | |||
| 21 | R | HpyIN1ORF6045P (100% identity) | HpyKH15ORFZP | |
| 23 | M | site-specific DNA-methyltransferase | M.HpyKH15ORFZP | |