Helicobacter pylori KH12 |
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Putative Helicobacter pylori KH12 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,531,748 bp
GenBank #: PHMM00000000 (NZ_PHMM00000000)
REBASE acronym: HpyKH12
Org_num: 31841
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.HpyUM084ORF7450P (63% identity) | S.HpyKH12ORFC1P | |
| 1 | R | HpyKH6ORFE1P (98% identity) | HpyKH12ORFVP | |
| 4 | hydroxyethylthiazole kinase | |||
| 1 | M | M.HpySP709XIV (95% identity) | M.HpyKH12ORFRP | |
| 2 | phosphatase PAP2 family protein | |||
| 17 | 631 aa hypothetical protein U063_1207 | |||
| ??? | R | HpySP323ORF2195P (91% identity) | HpyKH12ORFXP | |
| 21 | M | M.HpyKH6ORFQP (97% identity) | M.HpyKH12ORFXP | |
| 22 | S | S.HpyKH6ORFQP (99% identity) | S.HpyKH12ORFXP | |
| 140 | glutamine--fructose-6-phosphate transaminase | |||
| 142 | S | S.HpyKH6ORFVP (100% identity) | S.HpyKH12ORFIP | |
| 143 | 258 aa unknown | |||
| ??? | M | M.HpyIR9ORF7305P (65% identity) | M.HpyKH12ORFIP | |
| 148 | M48 family peptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | 61 aa hypothetical protein | |||
| 2 | M | M.HpyKH6ORFFP (99% identity) | CCTC | M.HpyKH12ORFBP |
| 3 | sodium/proline symporter | |||
| 1 | site-specific DNA-methyltransferase | |||
| 2 | M | M2.HpyGE16VI (95% identity) | GAAGA | M.HpyKH12ORFZP |
| 3 | site-specific DNA-methyltransferase | |||
| 4 | R | HpyKH7ORFUP (95% identity) | GAAGA | HpyKH12ORFZP |
| 5 | DNA-binding response regulator | |||
| ??? | M | M.HpyKH6ORFH1P (100% identity) | M.HpyKH12ORFB1P | |
| 3 | glycosyltransferase family 8 protein | |||
| 2 | DUF1887 family protein | |||
| 3 | M | M1.HpyLI01II (99% identity) | TCTTC | M.HpyKH12ORFA1P |
| 4 | site-specific DNA-methyltransferase | |||
| 16 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 17 | M | M.HpyCOL203VI (99% identity) | GANTC | M.HpyKH12ORFGP |
| 18 | R | HpySP707VIIP (96% identity) | GANTC | HpyKH12ORFGP |
| 19 | DNA methyltransferase | |||
| 23 | Laminin subunit alpha-2 precursor | |||
| 26 | R | HpyPO103VIIP (98% identity) | TCNNGA | HpyKH12ORFFP |
| 27 | M | M.HpyKH30ORFEP (100% identity) | TCNNGA | M.HpyKH12ORFFP |
| 28 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 36 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 37 | M | M.HpyCOL202IX (98% identity) | M.HpyKH12ORFEP | |
| 38 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 51 | DNA polymerase I | |||
| ??? | S | S.HpyGRE043ORF7065P (93% identity) | S.HpyKH12ORFMP | |
| 55 | RM | HpyKH6ORFSP (100% identity) | HpyKH12ORFMP | |
| 56 | ComF family protein | |||
| 54 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 55 | R | HpyKH6ORFGP (100% identity) | GATC | HpyKH12ORFCP |
| 56 | M | M.Hpyoh1ORF3300P (97% identity) | GATC | M.HpyKH12ORFCP |
| 57 | alpha-1,2-fucosyltransferase | |||
| 72 | metalloendopeptidase like protein | |||
| 73 | R | HpyH012IVP (96% identity) | GTAC | HpyKH12ORFDP |
| 74 | M | M.HpyKH19ORFFP (98% identity) | GTAC | M.HpyKH12ORFDP |
| 75 | DNA topoisomerase subunit B | |||
| 72 | restriction endonuclease | |||
| 73 | M | M.HpyIR3ORF530P (66% identity) | M1.HpyKH12ORFUP | |
| 74 | M | M.HpyPU009ORF505P (30% identity) | M2.HpyKH12ORFUP | |
| 75 | 5'-nucleotidase protein | |||
| 76 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 77 | R | HpyKH29ORFGP (97% identity) | GTNNAC | HpyKH12ORFHP |
| 78 | M | M.HpySP701VII (92% identity) | GTNNAC | M.HpyKH12ORFHP |
| 80 | ATP-dependent helicase | |||
| 93 | YjgP/YjgQ family permease | |||
| 94 | M | M1.HpyISR2IV (99% identity) | CCATC | M1.HpyKH12ORFLP |
| 95 | M | M2.HpyC204IV (93% identity) | CCATC | M2.HpyKH12ORFLP |
| 96 | R | HpyCH114IIIP (97% identity) | CCATC | HpyKH12ORFLP |
| 97 | outer membrane protein | |||
| 98 | catalase family peroxidase | |||
| 100 | M | M.HpyKH6ORFC1P (100% identity) | M.HpyKH12ORFSP | |
| 101 | translational GTPase TypA | |||
| 103 | modification methylase VspI domain protein | |||
| 104 | M | M.HpyISR4II (97% identity) | ATTAAT | M.HpyKH12ORFTP |
| 116 | 227 aa Hypothetical protein | |||
| 117 | RM | HpyKH6ORFUP (99% identity) | HpyKH12ORFJP | |
| 118 | 970 aa hypothetical protein | |||
| 167 | 64 aa hypothetical protein | |||
| 169 | RM | HpyLI06ORF3295P (73% identity) | HpyKH12ORFQBP | |
| 171 | RM | HpyKH6ORFA1P (17% identity) | HpyKH12ORFQAP | |
| 172 | -binding protein | |||
| 170 | 68 aa hypothetical protein | |||
| 171 | M | M.HpyL030V (98% identity) | TGCA | M.HpyKH12ORFAP |
| 173 | R | HpyLI06IVP (99% identity) | TGCA | HpyKH12ORFAP |
| 175 | elongation factor Ts | |||
| 248 | serine acetyltransferase | |||
| 249 | R | HpyKH6ORFZP (100% identity) | CATG | HpyKH12ORFNP |
| 253 | M | M.HpyKH6ORFZP (99% identity) | CATG | M.HpyKH12ORFNP |
| 254 | HAD family hydrolase | |||
| 234 | chaperone protein ClpB | |||
| ??? | M | M.HpyPU009IV (99% identity) | M.HpyKH12ORFOP | |
| 241 | R | HpyKH39ORFFP (97% identity) | HpyKH12ORFOP | |
| 244 | DNA -methyltransferase | |||
| 241 | 184 aa hypothetical protein HMPREF1415_00409 | |||
| 244 | M | M.HpyNCI22IX (98% identity) | TCGA | M.HpyKH12ORFPP |
| 245 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyIN1ORF6045P (54% identity) | M.HpyKH12ORFYP | |
| 2 | DUF1887 family protein | |||
| 21 | DNA/RNA non-specific endonuclease | |||
| 22 | M | M.HpyBR9XVIII (94% identity) | M.HpyKH12ORFWP | |
| 23 | R | HpyG005ORF6785P (90% identity) | HpyKH12ORFWP | |
| 24 | biotin synthase | |||
| 117 | class I SAM-dependent DNA methyltransferase | |||
| 118 | R | HpyPOR113ORF6940P (94% identity) | HpyKH12ORFKP | |
| ??? | M | M.HpySP805ORF7120P (96% identity) | M.HpyKH12ORFKP | |
| 125 | ATP-dependent DNA helicase | |||