Helicobacter pylori KH10 |
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Putative Helicobacter pylori KH10 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,632,401 bp
GenBank #: PHMO00000000 (NZ_PHMO00000000)
REBASE acronym: HpyKH10
Org_num: 31839
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | restriction endonuclease subunit S | |||
| 2 | R | HpySW33ORF5955P (94% identity) | HpyKH10ORFUP | |
| 5 | hydroxyethylthiazole kinase | |||
| 17 | 631 aa hypothetical protein U063_1207 | |||
| ??? | R | HpySW06ORF2315P (90% identity) | HpyKH10ORFNP | |
| 21 | M | M.HpyI025XIII (95% identity) | M.HpyKH10ORFNP | |
| 22 | S | S.HpyT023ORF2170P (97% identity) | S.HpyKH10ORFNP | |
| 24 | polyphosphate kinase 1 | |||
| 37 | integrase | |||
| 38 | S | S.HpyT004ORF7085P (45% identity) | S.HpyKH10ORFQP | |
| ??? | M | M.HpyUM084ORF2305P (78% identity) | M.HpyKH10ORFQP | |
| ??? | R | Hpyfe6ORF7435P (88% identity) | HpyKH10ORFQP | |
| 43 | M48 family peptidase | |||
| 52 | 81 aa hypothetical protein HPHPP11B_1069 | |||
| 53 | M | M.HpyKH2ORFUP (82% identity) | M.HpyKH10ORFB1P | |
| 54 | 65 aa hypothetical protein | |||
| 88 | cadmium-translocating P-type ATPase | |||
| 90 | S | S.HpyMKF10ORF558P (89% identity) | S.HpyKH10ORFTP | |
| 91 | outer membrane beta-barrel protein HofF | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | HpyMA20ORF260P (68% identity) | HpyKH10ORFIP | |
| 6 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 1 | M | M.HpyFD535ORFBP (97% identity) | ATTAAT | M.HpyKH10ORFYP |
| 2 | modification methylase VspI domain protein | |||
| 3 | 712 aa hypothetical protein | |||
| ??? | RM | HpySP111ORF7035P (76% identity) | HpyKH10ORFXP | |
| 6 | 180 aa hypothetical protein | |||
| 5 | 108 aa hypothetical protein | |||
| 6 | M | M.HpyKH45ORFA1P (98% identity) | ACNGT | M.HpyKH10ORFZP |
| 7 | R | HpyID3IIP (99% identity) | ACNGT | HpyKH10ORFZP |
| 9 | DNA cytosine methyltransferase | |||
| 6 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 7 | M | M.HpyKH7ORFAP (98% identity) | M.HpyKH10ORFHP | |
| 8 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 7 | GIY-YIG nuclease family protein | |||
| 9 | M | M.HpyBG3ORF2400P (99% identity) | M.HpyKH10ORFA1P | |
| 10 | R | HpyMA02ORF2105P (98% identity) | ACGT | HpyKH10ORFA1P |
| 11 | catalase family peroxidase | |||
| 12 | S41 family peptidase | |||
| 13 | RM | HpyBG3ORF6480P (28% identity) | HpyKH10ORFF1P | |
| 21 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 22 | R | HpyT004XP (95% identity) | GTNNAC | HpyKH10ORFJP |
| 23 | M | M.HpyUM084ORF7720P (92% identity) | GTNNAC | M.HpyKH10ORFJP |
| 25 | ATP-dependent helicase | |||
| 27 | 3'-5' exonuclease | |||
| 28 | R | HpyUM067ORF4025P (98% identity) | CCNNGG | HpyKH10ORFFP |
| 29 | M | M.HpyKH36ORFIP (99% identity) | CCNNGG | M.HpyKH10ORFFP |
| 30 | 3'-5' exonuclease | |||
| 37 | DNA topoisomerase subunit B | |||
| 38 | M | M.HpyNAB47ORFC1P (97% identity) | M.HpyKH10ORFKP | |
| 39 | R | HpyKH39ORFHP (98% identity) | HpyKH10ORFKP | |
| 40 | metalloendopeptidase like protein | |||
| 51 | outer membrane protein | |||
| ??? | RM | HpyNP12ORF3470P (90% identity) | HpyKH10ORFSP | |
| 59 | -binding protein | |||
| 59 | HAD family hydrolase | |||
| 60 | M | M.HpyMA19I (96% identity) | CATG | M.HpyKH10ORFEP |
| 61 | IceA2 protein | |||
| 68 | 68 aa hypothetical protein | |||
| ??? | M | M.HpyOki112ORF7890P (98% identity) | M.HpyKH10ORFPP | |
| ??? | R | HpySW06VIP (98% identity) | HpyKH10ORFPP | |
| 75 | cytochrome c1 | |||
| 71 | ComF family protein | |||
| 72 | RM | HpyKH40ORFQP (94% identity) | HpyKH10ORFVP | |
| ??? | S | S.HpySW30ORF7245P (65% identity) | S.HpyKH10ORFVP | |
| 75 | DNA polymerase I | |||
| 90 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 91 | M | M.HpySP08IV (99% identity) | TCNNGA | M.HpyKH10ORFGP |
| 92 | R | HpyMM02XP (100% identity) | TCNNGA | HpyKH10ORFGP |
| 93 | Laminin subunit alpha-2 precursor | |||
| 92 | alpha-1,2-fucosyltransferase | |||
| 93 | M | M.HpyKH34ORFAP (96% identity) | GATC | M.HpyKH10ORFDP |
| 94 | R | HpyFD719ORF765P (96% identity) | GATC | HpyKH10ORFDP |
| 95 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 108 | 366 aa hypothetical protein | |||
| 110 | M | M.HpySP323ORF7885P (99% identity) | M.HpyKH10ORFCP | |
| 111 | 66 aa hypothetical protein GZ76_04005 | |||
| 138 | 156 aa hypothetical protein HMPREF1411_00627 | |||
| 140 | M | M.Hpyoh1ORF4535P (99% identity) | M.HpyKH10ORFAP | |
| 141 | Translation elongation factor LepA | |||
| 186 | uncharacterized protein | |||
| 187 | M | M.HpyMA17X (100% identity) | CTNAG | M.HpyKH10ORFBP |
| 188 | R | HpyQ35ORFMP (97% identity) | CTNAG | HpyKH10ORFBP |
| 189 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 223 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 224 | M | M1.HpyP007ORF255P (98% identity) | CCTC | M1.HpyKH10ORFOP |
| 226 | M | M2.HpyKH32ORFC1P (98% identity) | M2.HpyKH10ORFOP | |
| 229 | sodium/proline symporter | |||
| 259 | chaperone protein ClpB | |||
| 263 | M | M.HpyKH40ORFBP (99% identity) | CCGG | M.HpyKH10ORFLP |
| 264 | R | HpyKH40ORFBP (98% identity) | HpyKH10ORFLP | |
| 266 | DNA -methyltransferase | |||
| 264 | endonuclease MjaVIP | |||
| 266 | M | M.HpyMM01ORF1255P (92% identity) | M.HpyKH10ORFMP | |
| 267 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | R | HpyKH14ORFPP (97% identity) | HpyKH10ORFWP | |
| 3 | 712 aa hypothetical protein | |||
| ??? | M | M.HpyK044ORF620P (93% identity) | M.HpyKH10ORFE1P | |
| 17 | DNA-binding response regulator | |||
| ??? | M | M.HpyKH37ORFYP (92% identity) | M.HpyKH10ORFD1P | |
| 21 | R | HpyKH22ORFVP (94% identity) | HpyKH10ORFD1P | |
| 23 | rod shape-determining MreC family protein | |||
| 39 | DNA/RNA non-specific endonuclease | |||
| 40 | M | M.HpyKH22ORFYP (95% identity) | M.HpyKH10ORFC1P | |
| 41 | R | HpyKH44ORFGP (87% identity) | HpyKH10ORFC1P | |
| 167 | 75 aa hypothetical protein HMPREF1403_00513 | |||
| 168 | M | M.HpyMM03XVIII (94% identity) | M.HpyKH10ORFRP | |
| ??? | R | HpyMA19ORF3530P (96% identity) | HpyKH10ORFRP | |
| 172 | 2-oxoglutarate:acceptor oxidoreductase | |||