Escherichia coli |
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Putative Escherichia coli RM systems
Ref: Chang,J. and Tang,B. unpublished
REBASE ref # 27736
| Sequence length: | GenBank #: | |
| Chromosome: | 5,539,489 bp | CP033635 |
| plasmid pTB-nb1: | 147,451 bp | CP033632 |
| plasmid pTB-nb3: | 82,252 bp | CP033634 |
| plasmid pTB-nb4: | 253,793 bp | CP033636 |
REBASE acronym: EcoB122
Org_num: 31813
All begin CQP61_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4365 | IS3 family transposase | |||
| 4370 | M | M.SenSI167ORF3215P (100% identity) | M.EcoB122ORF4370P | |
| 4375 | S | S.EcoLR72ORF18740P (100% identity) | S.EcoB122ORF4370P | |
| 4380 | DUF4268 domain-containing protein | |||
| 4385 | R | SflSTLE3ORF22785P (100% identity) | EcoB122ORF4370P | |
| 4390 | ATP-binding protein | |||
| 24930 | 540 aa hypothetical protein | |||
| 24935 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoB122ORF24940P |
| 24940 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoB122ORF24940P |
| 24945 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoB122ORF24940P |
| 24950 | 65 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2755 | cell division protein DamX | |||
| 2760 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoB122DamP |
| 2765 | ribulose-phosphate 3-epimerase | |||
| 3290 | DUF2556 domain-containing protein | |||
| 3295 | M | M.Ecost20ORFAP (100% identity) | ATGCAT | M.EcoB122ORF3295P |
| 3300 | DNA-binding transcriptional regulator Fis | |||
| 8130 | DUF1382 family protein | |||
| 8135 | M | M.Eco70218ORF8440P (100% identity) | M.EcoB122ORF8135P | |
| 8140 | PerC family transcriptional regulator | |||
| 17125 | EamA family transporter | |||
| 17130 | V | V.SsoSE61DcmP (100% identity) | V.EcoB122DcmP | |
| 17135 | M | M.SflWW1DcmP (100% identity) | CCWGG | M.EcoB122DcmP |
| 17140 | phosphohydrolase | |||
| 23600 | RM | EcoXDLORF21245P (100% identity) | EcoB122ORF23600P | |
| 23605 | DEAD/DEAH box helicase | |||
| 23645 | HNH endonuclease | |||
| 23650 | R | EcoXDLORF21295P (100% identity) | EcoB122ORF23650P | |
| 23655 | 332 aa hypothetical protein | |||
| 26590 | 345 aa hypothetical protein | |||
| 26595 | M | M.EcosE2ORF21575P (100% identity) | M.EcoB122ORF26595P | |
| 26600 | 68 aa hypothetical protein | |||
| plasmid pTB-nb1 | ||||
| 180 | XRE family transcriptional regulator | |||
| 185 | R | SflFF67ORF22305P (100% identity) | GCWGC | EcoB122ORF185P |
| 190 | IS3-like element IS3 family transposase | |||
| 300 | 62 aa hypothetical protein | |||
| 305 | M | Dam family site-specific | M.EcoB122ORF305P | |
| 310 | 80 aa hypothetical protein | |||
| plasmid pTB-nb3 | ||||
| 2195 | 61 aa hypothetical protein | |||
| 2200 | M | M.EcoG2M7ORF25790P (100% identity) | M.EcoB122ORF2200P | |
| 2205 | 73 aa hypothetical protein | |||
| plasmid pTB-nb4 | ||||
| 29950 | 202 aa hypothetical protein | |||
| 29955 | M | M.YpsF1ORFBP (100% identity) | M.EcoB122ORF29955P | |
| 29960 | 108 aa hypothetical protein | |||
| 30555 | DUF1173 family protein | |||
| 30560 | M | M.YpsF1ORFCP (100% identity) | M.EcoB122ORF30560P | |
| 30565 | thermonuclease family protein | |||
| 31250 | 284 aa hypothetical protein | |||
| 31255 | M | M.YpsF1ORFDP (100% identity) | M.EcoB122ORF31255P | |
| 31260 | DNA-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5535 | DUF1281 domain-containing protein | |||
| 5540 | R | EcoUM1886ORF4740P (100% identity) | EcoB122ORF5545P | |
| 5545 | M | M.SenH18ORF28191P (99% identity) | M.EcoB122ORF5545P | |
| 5550 | IS3 family transposase | |||