Salmonella enterica subsp. enterica serovar Typhi 311189_223186 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Typhi 311189_223186 RM systems
Ref: Tanmoy,A.M.T. et al. unpublished
REBASE ref # 27692
| Sequence length: | GenBank #: | |
| Chromosome: | 4,783,762 bp | CP029880 |
| plasmid pHCM1: | 214,596 bp | CP029879 |
REBASE acronym: Sen223186
Org_num: 31620
All begin SM223186_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5964 | endoribonuclease SymE | |||
| 5966 | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.Sen223186ORF5966P |
| ??? | M | M.SenTY585ORFHP (100% identity) | GAANNNNNNNNTCGC | M.Sen223186ORF5966P |
| 5968 | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | Sen223186ORF5966P |
| 5970 | mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1417 | bacteriophage protein | |||
| 125 | M | M.StyTORF1926P (100% identity) | M.Sen223186ORF125P | |
| 1418 | bacteriophage protein | |||
| 1428 | bacteriophage protein | |||
| 118 | M | M.StyTORF1914P (100% identity) | M.Sen223186ORF118P | |
| 1430 | bacteriophage protein | |||
| 4386 | DMT superfamily transporter inner membrane | |||
| 2611 | V | V.StyTDcmP (100% identity) | V.Sen223186DcmP | |
| 2617 | M | M.StyTDcmP (100% identity) | CCWGG | M.Sen223186DcmP |
| 2621 | 231 aa hypothetical protein | |||
| 246 | Fis DNA-binding protein | |||
| 249 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen223186ORF249P |
| 252 | 54 aa hypothetical protein | |||
| 2877 | 75 aa hypothetical protein | |||
| 2900 | M | M.StyTORF3409P (100% identity) | GATC | M.Sen223186ORF2900P |
| 2942 | endonuclease | |||
| 5270 | cell division protein DamX | |||
| 5268 | M | DNA adenine methylase | GATC | M.Sen223186DamP |
| 5271 | ribulose-phosphate 3-epimerase | |||
| 5681 | bacteriophage replication protein A | |||
| 5679 | M | M.StyTORF4329P (100% identity) | M.Sen223186ORF5679P | |
| 5683 | exonuclease | |||
| plasmid pHCM1 | ||||
| 7089 | 385 aa hypothetical protein | |||
| 7071 | M | M.Ype21801ORF197P (100% identity) | M.Sen223186ORF7071P | |
| 7082 | 273 aa hypothetical protein | |||
| 7200 | 439 aa hypothetical protein | |||
| 7201 | M | M.StypAKU1ORFCP (100% identity) | M.Sen223186ORF7201P | |
| 7195 | nuclease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 328 | metabolite transport protein | |||
| 327 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen223186ORF327P |
| ??? | R | StyTORF2507P (100% identity) | CAGAG | Sen223186ORF327P |
| 725 | terminal oxidase subunit I | |||
| 2631 | 462 aa hypothetical protein | |||
| 2633 | M | M.SmaBWH35ORF16840P (100% identity) | M.Sen223186ORF2633P | |
| 2635 | R | StyTORF872P (100% identity) | Sen223186ORF2633P | |
| 553 | PilV-like protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5968 | subunit R of type I restriction-modification | |||
| 5970 | R | StyTMrrP (100% identity) | Sen223186MrrP | |
| 5969 | 95 aa hypothetical protein | |||