Dickeya fangzhongdai PA1 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Dickeya fangzhongdai PA1 RM systems
Ref: Zhang,J. et al. unpublished
REBASE ref # 27585
Complete sequence: 4,979,223 bp
GenBank #: CP020872
REBASE acronym: DfaPA1
Org_num: 31398
All begin B6N31_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2225 | ATPase | |||
| 2230 | R | Cfr200ORF3365P (98% identity) | GAYGNNNNNNNTGAA | DfaPA1IIP |
| 2235 | S | S.Pan13355ORF3672P (96% identity) | GAYGNNNNNNNTGAA | S.DfaPA1II |
| 2240 | M | M.Cro51459ORF22080P (96% identity) | GAYGNNNNNNNTGAA | M.DfaPA1II |
| 2245 | IS3 family transposase | |||
| 22120 | ABC transporter | |||
| 22125 | S | S.DzeMS2ORF21310P (89% identity) | CGANNNNNNCTCC | S.DfaPA1I |
| 22130 | M | M.DzeORF4241P (94% identity) | CGANNNNNNCTCC | M.DfaPA1I |
| 22135 | DNA damage-inducible protein D | |||
| 22140 | R | Ddi6719ORF21725P (91% identity) | CGANNNNNNCTCC | DfaPA1IP |
| 22145 | tRNA modification GTPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4705 | integrase | |||
| 4710 | RM | DspMK7ORFBP (100% identity) | DfaPA1ORF4710P | |
| 4715 | S | S.DspMK7ORFBP (100% identity) | S.DfaPA1ORF4710P | |
| 4720 | 77 aa hypothetical protein | |||
| 4725 | DNA-invertase | |||
| 4730 | RM | DfaB16ORF4545P (99% identity) | DfaPA1ORF4730P | |
| 4735 | ATP-dependent helicase | |||
| 8525 | 77 aa hypothetical protein | |||
| 8530 | RM | Sen3080ORF8010P (97% identity) | TACGAG | DfaPA1III |
| 8535 | DEAD/DEAH box helicase | |||
| 20155 | ribulose-phosphate 3-epimerase | |||
| 20160 | M | M.DspS1ORFAP (100% identity) | GATC | M.DfaPA1Dam |
| 20165 | SPOR domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2215 | 101 aa hypothetical protein | |||
| 2220 | R | Rpl9179McrC2P (92% identity) | DfaPA1McrCP | |
| 2225 | R | CfrLDL33McrBP (96% identity) | DfaPA1McrBP | |
| 2230 | restriction endonuclease subunit R | |||