Ref: Hirk,S. et al. unpublished

REBASE ref # 26993

Contig set: 2,233,553 bp

GenBank #: PTPG00000000 (NZ_PTPG00000000)

REBASE acronym: Ngo1616

Org_num: 30960

 

All begin C5B30_

Type I
ORF Gene Most similar Specificity Name
 
3730 ATP-dependent Clp protease ATP-binding subunit
3735 R Ngos1291ORF7750P (100% identity) Ngo1616ORF3755P
3740 sodium:proton exchanger
3745 S S.NgoWNII (100% identity) S.Ngo1616ORF3755P
3750 DNA damage-inducible protein D
3755 M M.Ngo4718ORF1640P (100% identity) M.Ngo1616ORF3755P
3760 ADP-L-glycero-D-mannoheptose-6-epimerase
 
7815 replication-associated recombination protein A
7820 R NgoWOIP (100% identity) GAGNNNNNTAC Ngo1616ORF7845P
7825 hydroxyacid dehydrogenase
7830 S S.Ngos1291ORF9245P (100% identity) GAGNNNNNTAC S.Ngo1616ORF7845P
7835 186 aa hypothetical protein
7840 0 aa hypothetical protein
7845 M M.Ngos1291ORF9245P (100% identity) GAGNNNNNTAC M.Ngo1616ORF7845P
7850 ABC transporter
Type II
ORF Gene Most similar Specificity Name
 
12605 replication initiation factor
12610 V very short patch repair endonuclease V.Ngo1616ORF12620P
??? R NgoTFGB2ORF1219P (100% identity) Ngo1616ORF12620P
??? M M.Ngos1291ORF65P (100% identity) M.Ngo1616ORF12620P
12630 48 aa hypothetical protein
 
7700 3-isopropylmalate dehydrogenase
7705 R Ngos1291ORF9120P (100% identity) GGNNCC Ngo1616ORF7710P
7710 M DNA (cytosine-5-)-methyltransferase GGNNCC M.Ngo1616ORF7710P
7715 3-isopropylmalate dehydratase small subunit
 
40 5-(carboxyamino)imidazole ribonucleotide
45 R NgoWSORF1056P (100% identity) GCCGGC Ngo1616ORF50P
50 M DNA cytosine methyltransferase GCCGGC M.Ngo1616ORF50P
55 anthranilate synthase component I
 
11900 excinuclease ABC subunit UvrA
11905 R restriction endonuclease CCGCGG Ngo1616ORF11910P
11910 M DNA (cytosine-5-)-methyltransferase CCGCGG M.Ngo1616ORF11910P
11915 transposase
 
3300 GTPase ObgE
3305 M DNA cytosine methyltransferase RGCGCY M.Ngo1616ORF3305P
3310 R HaeII family restriction endonuclease RGCGCY Ngo1616ORF3305P
3315 cysteine--tRNA ligase
 
2560 ribosome-recycling factor
2565 M DNA (cytosine-5-)-methyltransferase GGCC M.Ngo1616ORF2565P
2570 R NgoWOORF1958P (100% identity) GGCC Ngo1616ORF2565P
2575 group 2 glycosyl transferase
 
7015 93 aa hypothetical protein
7020 R Ngo4718ORF4860P (100% identity) GGTGA Ngo1616ORF7025P
7025 M M1.NgoFQ35ORF11380P (100% identity) GGTGA M1.Ngo1616ORF7025P
7030 M DNA (cytosine-5-)-methyltransferase GGTGA M2.Ngo1616ORF7025P
7035 RNA-binding transcriptional accessory protein
 
1170 phenylalanine--tRNA ligase subunit alpha
1175 V very short patch repair endonuclease V.Ngo1616ORFAP
??? M M.NgoWSORF391P (100% identity) M.Ngo1616ORFAP
1190 R endonuclease Ngo1616ORFAP
1195 phenylalanine--tRNA ligase subunit beta
 
1950 leucine--tRNA ligase
1955 R restriction endonuclease GATC Ngo1616ORF1960P
??? M M.NgoCT213ORF40P (100% identity) M.Ngo1616ORF1960P
1975 0 aa hypothetical protein
 
1485 IS1595 family transposase
1490 RM SAM-dependent DNA methyltransferase GACNNNNNTGA Ngo1616ORF1490P
1495 S methyltransferase GACNNNNNTGA S.Ngo1616ORF1490P
1500 0 aa hypothetical protein
 
1530 DEAD/DEAH box helicase
1535 R restriction endonuclease GCSGC Ngo1616ORF1540P
1540 M DNA (cytosine-5-)-methyltransferase GCSGC M.Ngo1616ORF1540P
1545 77 aa hypothetical protein
Type III
ORF Gene Most similar Specificity Name
 
10840 tRNA 2-thiocytidine(32) synthetase TtcA
10845 R NgoWPIIP (100% identity) CCACC Ngo1616ORF10850P
10850 M type III restriction endonuclease subunit M CCACC M.Ngo1616ORF10850P
 
5940 tRNA pseudouridine(55) synthase TruB
??? M M.NgoWKORF746P (99% identity) M.Ngo1616ORF5945P
5955 R Ngos1291ORF8930P (100% identity) Ngo1616ORF5945P
5960 alpha-hydroxy-acid oxidizing protein