Ref: Hirk,S. et al. unpublished

REBASE ref # 26993

Contig set: 2,217,914 bp

GenBank #: PTPI00000000 (NZ_PTPI00000000)

REBASE acronym: Ngo4618

Org_num: 30957

 

All begin C5B38_

Type I
ORF Gene Most similar Specificity Name
 
4455 ATP-dependent Clp protease ATP-binding subunit
4460 R Ngos1291ORF7750P (100% identity) Ngo4618ORF4480P
4465 sodium:proton exchanger
4470 S S.NgoWNII (100% identity) S.Ngo4618ORF4480P
4475 DNA damage-inducible protein D
4480 M M.Ngo4718ORF1640P (100% identity) M.Ngo4618ORF4480P
4485 ADP-L-glycero-D-mannoheptose-6-epimerase
 
4075 replication-associated recombination protein A
4080 R NgoWOIP (100% identity) GAGNNNNNTAC Ngo4618ORF4105P
4085 hydroxyacid dehydrogenase
4090 S S.Ngos1291ORF9245P (100% identity) GAGNNNNNTAC S.Ngo4618ORF4105P
4095 186 aa hypothetical protein
4100 0 aa hypothetical protein
4105 M M.Ngos1291ORF9245P (100% identity) GAGNNNNNTAC M.Ngo4618ORF4105P
4110 ABC transporter
Type II
ORF Gene Most similar Specificity Name
 
3960 3-isopropylmalate dehydrogenase
3965 R Ngos1291ORF9120P (100% identity) GGNNCC Ngo4618ORF3970P
3970 M DNA (cytosine-5-)-methyltransferase GGNNCC M.Ngo4618ORF3970P
3975 3-isopropylmalate dehydratase small subunit
 
12565 V very short patch repair endonuclease V.Ngo4618ORF12575P
??? R NgoTFGB2ORF1219P (100% identity) Ngo4618ORF12575P
??? M M.Ngos1291ORF65P (100% identity) M.Ngo4618ORF12575P
12585 48 aa hypothetical protein
 
11865 excinuclease ABC subunit UvrA
11870 R restriction endonuclease CCGCGG Ngo4618ORF11875P
11875 M DNA (cytosine-5-)-methyltransferase CCGCGG M.Ngo4618ORF11875P
11880 transposase
 
4820 GTPase ObgE
4825 M DNA cytosine methyltransferase RGCGCY M.Ngo4618ORF4825P
4830 R HaeII family restriction endonuclease RGCGCY Ngo4618ORF4825P
4835 cysteine--tRNA ligase
 
5225 ribosome-recycling factor
5230 M M.NgoSH240ORFKP (100% identity) GGCC M.Ngo4618ORF5230P
5235 R Ngos1291ORF3515P (100% identity) GGCC Ngo4618ORF5230P
5240 group 2 glycosyl transferase
 
8215 93 aa hypothetical protein
8220 R Ngo4718ORF4860P (100% identity) GGTGA Ngo4618ORF8225P
8225 M M1.NgoFQ35ORF11380P (100% identity) GGTGA M1.Ngo4618ORF8225P
8230 M DNA (cytosine-5-)-methyltransferase GGTGA M2.Ngo4618ORF8225P
8235 RNA-binding transcriptional accessory protein
 
275 phenylalanine--tRNA ligase subunit alpha
280 V very short patch repair endonuclease V.Ngo4618ORF285P
??? M M.NgoTFGB2ORF299P (100% identity) M.Ngo4618ORF285P
295 R endonuclease Ngo4618ORF285P
300 phenylalanine--tRNA ligase subunit beta
 
1980 leucine--tRNA ligase
1985 R restriction endonuclease GATC Ngo4618ORF1985P
??? hypothetical protein
 
1985 restriction endonuclease
??? M M.NgoCT213ORF40P (100% identity) M.Ngo4618ORF1990P
2005 0 aa hypothetical protein
 
3900 anthranilate synthase component I
3905 M M.NgoWSORF1056P (100% identity) GCCGGC M.Ngo4618ORF3905P
3910 R NgoWSORF1056P (100% identity) GCCGGC Ngo4618ORF3905P
3915 5-(carboxyamino)imidazole ribonucleotide
 
590 IS1595 family transposase
595 RM SAM-dependent DNA methyltransferase GACNNNNNTGA Ngo4618ORF595P
600 S methyltransferase GACNNNNNTGA S.Ngo4618ORF595P
605 0 aa hypothetical protein
 
630 uroporphyrinogen decarboxylase
??? H DEAD/DEAH box helicase H.Ngo4618ORF645P
640 R restriction endonuclease GCSGC Ngo4618ORF645P
645 M DNA (cytosine-5-)-methyltransferase GCSGC M.Ngo4618ORF645P
650 77 aa hypothetical protein
Type III
ORF Gene Most similar Specificity Name
 
11020 tRNA 2-thiocytidine(32) synthetase TtcA
11025 R NgoWPIIP (100% identity) CCACC Ngo4618ORF11030P
11030 M type III restriction endonuclease subunit M CCACC M.Ngo4618ORF11030P
 
7385 tRNA pseudouridine(55) synthase TruB
??? M M.Ngo4318ORF5715P (100% identity) M.Ngo4618ORF7390P
7400 R Ngos1291ORF8930P (100% identity) Ngo4618ORF7390P
7405 alpha-hydroxy-acid oxidizing protein