Ref: Hirk,S. et al. unpublished

REBASE ref # 26993

Contig set: 2,223,307 bp

GenBank #: PTPM00000000 (NZ_PTPM00000000)

REBASE acronym: Ngo4218

Org_num: 30962

 

All begin C5B36_

Type I
ORF Gene Most similar Specificity Name
 
8830 replication-associated recombination protein A
8835 R NgoWOIP (100% identity) GAGNNNNNTAC Ngo4218ORF8860P
8840 hydroxyacid dehydrogenase
8845 S S.Ngos1291ORF9245P (100% identity) GAGNNNNNTAC S.Ngo4218ORF8860P
8850 186 aa hypothetical protein
8855 0 aa hypothetical protein
8860 M M.Ngos1291ORF9245P (100% identity) GAGNNNNNTAC M.Ngo4218ORF8860P
8865 ABC transporter
 
880 ADP-L-glycero-D-mannoheptose-6-epimerase
885 M M.Ngo4718ORF1640P (100% identity) M.Ngo4218ORF885P
890 DNA damage-inducible protein D
895 S S.NgoWNII (100% identity) S.Ngo4218ORF885P
900 sodium:proton exchanger
905 R Ngos1291ORF7750P (100% identity) Ngo4218ORF885P
910 ATP-dependent Clp protease ATP-binding subunit
Type II
ORF Gene Most similar Specificity Name
 
12495 replication initiation factor
12500 V very short patch repair endonuclease V.Ngo4218ORF12510P
??? R NgoTFGB2ORF1219P (100% identity) Ngo4218ORF12510P
??? M M.Ngos1291ORF65P (100% identity) M.Ngo4218ORF12510P
12520 48 aa hypothetical protein
 
5 M DNA (cytosine-5-)-methyltransferase GCSGC M.Ngo4218ORF5P
10 R restriction endonuclease GCSGC Ngo4218ORF5P
??? H DEAD/DEAH box helicase H.Ngo4218ORF5P
20 uroporphyrinogen decarboxylase
 
8715 3-isopropylmalate dehydrogenase
8720 R Ngos1291ORF9120P (100% identity) GGNNCC Ngo4218ORF8725P
8725 M DNA (cytosine-5-)-methyltransferase GGNNCC M.Ngo4218ORF8725P
8730 3-isopropylmalate dehydratase small subunit
 
2740 5-(carboxyamino)imidazole ribonucleotide
2745 R NgoWSORF1056P (100% identity) GCCGGC Ngo4218ORF2750P
2750 M DNA cytosine methyltransferase GCCGGC M.Ngo4218ORF2750P
2755 anthranilate synthase component I
 
11810 excinuclease ABC subunit UvrA
11815 R restriction endonuclease CCGCGG Ngo4218ORF11820P
11820 M DNA (cytosine-5-)-methyltransferase CCGCGG M.Ngo4218ORF11820P
11825 transposase
 
8320 leucine--tRNA ligase
8325 R restriction endonuclease GATC Ngo4218ORF8335P
8330 DNA adenine methylase
??? M M.NgoCT213ORF40P (85% identity) M.Ngo4218ORF8335P
8345 0 aa hypothetical protein
 
45 0 aa hypothetical protein
50 S methyltransferase GACNNNNNTGA S.Ngo4218ORF55P
55 RM SAM-dependent DNA methyltransferase GACNNNNNTGA Ngo4218ORF55P
60 IS1595 family transposase
 
4355 GTPase ObgE
4360 M DNA cytosine methyltransferase RGCGCY M.Ngo4218ORF4360P
4365 R HaeII family restriction endonuclease RGCGCY Ngo4218ORF4360P
4370 cysteine--tRNA ligase
 
3225 ribosome-recycling factor
3230 M M.NgoPII (100% identity) GGCC M.Ngo4218ORF3230P
3235 R Ngos1291ORF3515P (100% identity) GGCC Ngo4218ORF3230P
3240 group 2 glycosyl transferase
 
7815 93 aa hypothetical protein
??? R Ngo4318ORF6975P (100% identity) GGTGA Ngo4218ORF7825P
7825 M M1.NgoFQ35ORF11380P (100% identity) GGTGA M1.Ngo4218ORF7825P
7830 M DNA (cytosine-5-)-methyltransferase GGTGA M2.Ngo4218ORF7825P
7835 RNA-binding transcriptional accessory protein
 
350 phenylalanine--tRNA ligase subunit beta
355 R endonuclease Ngo4218ORFAP
??? M M.NgoTFGB2ORF299P (100% identity) M.Ngo4218ORFAP
370 V very short patch repair endonuclease V.Ngo4218ORFAP
375 phenylalanine--tRNA ligase subunit alpha
Type III
ORF Gene Most similar Specificity Name
 
3860 M type III restriction endonuclease subunit M CCACC M.Ngo4218ORF3860P
3865 R NgoWPIIP (100% identity) CCACC Ngo4218ORF3860P
3870 tRNA 2-thiocytidine(32) synthetase TtcA
 
6985 tRNA pseudouridine(55) synthase TruB
??? M M.Ngo4318ORF5715P (100% identity) M.Ngo4218ORF6990P
7000 R Ngos1291ORF8930P (100% identity) Ngo4218ORF6990P
7005 alpha-hydroxy-acid oxidizing protein