Neisseria gonorrhoeae 980040-18 |
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Putative Neisseria gonorrhoeae 980040-18 RM systems
Ref: Hirk,S. et al. unpublished
REBASE ref # 26993
Contig set: 2,232,201 bp
GenBank #: PTPO00000000 (NZ_PTPO00000000)
REBASE acronym: Ngo4018
Org_num: 30950
All begin C5B26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4600 | ATP-dependent Clp protease ATP-binding subunit | |||
| 4605 | R | Ngos1291ORF7750P (100% identity) | Ngo4018ORF4625P | |
| 4610 | sodium:proton exchanger | |||
| 4615 | S | S.NgoWNII (100% identity) | S.Ngo4018ORF4625P | |
| 4620 | DNA damage-inducible protein D | |||
| 4625 | M | M.Ngo4718ORF1640P (100% identity) | M.Ngo4018ORF4625P | |
| 4630 | ADP-L-glycero-D-mannoheptose-6-epimerase | |||
| 7970 | replication-associated recombination protein A | |||
| 7975 | R | NgoWOIP (100% identity) | GAGNNNNNTAC | Ngo4018ORF8000P |
| 7980 | hydroxyacid dehydrogenase | |||
| 7985 | S | S.Ngos1291I (100% identity) | GAGNNNNNTAC | S.Ngo4018ORF8000P |
| 7990 | 186 aa hypothetical protein | |||
| 7995 | 0 aa hypothetical protein | |||
| 8000 | M | M.Ngos1291I (100% identity) | GAGNNNNNTAC | M.Ngo4018ORF8000P |
| 8005 | ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12405 | replication initiation factor | |||
| 12410 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo4018ORF12420P | |
| ??? | R | NgoTFGB2ORF1219P (100% identity) | Ngo4018ORF12420P | |
| ??? | M | M.Ngos1291ORF65P (100% identity) | M.Ngo4018ORF12420P | |
| 12430 | 48 aa hypothetical protein | |||
| 11490 | transposase | |||
| 11495 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo4018ORF11495P |
| 11500 | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo4018ORF11495P |
| 11505 | excinuclease ABC subunit UvrA | |||
| 7855 | 3-isopropylmalate dehydrogenase | |||
| 7860 | R | Ngos1291ORF9120P (100% identity) | GGNNCC | Ngo4018ORF7865P |
| 7865 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo4018ORF7865P |
| 7870 | 3-isopropylmalate dehydratase small subunit | |||
| 7240 | leucine--tRNA ligase | |||
| 7245 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo4018ORF7245P |
| 7250 | DNA adenine methylase | |||
| 7250 | DNA adenine methylase | |||
| 7255 | M | site-specific DNA-methyltransferase | M1.Ngo4018ORF7255P | |
| 7260 | M | site-specific DNA-methyltransferase | M2.Ngo4018ORF7255P | |
| 7265 | 0 aa hypothetical protein | |||
| 2450 | GTPase ObgE | |||
| 2455 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo4018ORF2455P |
| 2460 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo4018ORF2455P |
| 2465 | cysteine--tRNA ligase | |||
| 6925 | 93 aa hypothetical protein | |||
| ??? | R | Ngo4318ORF6975P (100% identity) | GGTGA | Ngo4018ORF6935P |
| 6935 | M | M1.NgoFQ35ORF11380P (100% identity) | GGTGA | M1.Ngo4018ORF6935P |
| 6940 | M | M1.NgoWSIII (100% identity) | GGTGA | M2.Ngo4018ORF6935P |
| 6945 | RNA-binding transcriptional accessory protein | |||
| 5065 | group 2 glycosyl transferase | |||
| 5070 | R | Ngos1291ORF3515P (100% identity) | GGCC | Ngo4018ORF5075P |
| 5075 | M | M.NgoSH240ORFKP (100% identity) | GGCC | M.Ngo4018ORF5075P |
| 5080 | ribosome-recycling factor | |||
| 810 | phenylalanine--tRNA ligase subunit alpha | |||
| 815 | V | V.NgoWSORF391P (100% identity) | V.Ngo4018ORF820P | |
| ??? | M | M.NgoTFGB2ORF299P (100% identity) | M.Ngo4018ORF820P | |
| 830 | R | NgoWSORF391P (100% identity) | Ngo4018ORF820P | |
| 835 | phenylalanine--tRNA ligase subunit beta | |||
| 2290 | anthranilate synthase component I | |||
| 2295 | M | M.Ngos1291ORF10080P (100% identity) | GCCGGC | M.Ngo4018ORF2295P |
| 2300 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo4018ORF2295P |
| 2305 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 1125 | IS1595 family transposase | |||
| 1130 | RM | Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | Ngo4018ORF1130P |
| 1135 | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.Ngo4018ORF1130P |
| 1140 | 0 aa hypothetical protein | |||
| 1165 | uroporphyrinogen decarboxylase | |||
| ??? | H | H.Ngo4718ORF645P (100% identity) | H.Ngo4018ORF1180P | |
| 1175 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo4018ORF1180P |
| 1180 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo4018ORF1180P |
| 1185 | 60 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11815 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 11820 | R | NgoWPIIP (100% identity) | CCACC | Ngo4018ORF11825P |
| 11825 | M | M.Ngos1291ORF8455P (100% identity) | CCACC | M.Ngo4018ORF11825P |
| 5885 | tRNA pseudouridine(55) synthase TruB | |||
| ??? | M | M.Ngo4318ORF5715P (100% identity) | M.Ngo4018ORF5890P | |
| 5900 | R | Ngos1291ORF8930P (100% identity) | Ngo4018ORF5890P | |
| 5905 | alpha-hydroxy-acid oxidizing protein | |||