Neisseria gonorrhoeae 980038-18 |
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Putative Neisseria gonorrhoeae 980038-18 RM systems
Ref: Hirk,S. et al. unpublished
REBASE ref # 26993
Contig set: 2,239,226 bp
GenBank #: PTPQ00000000 (NZ_PTPQ00000000)
REBASE acronym: Ngo3818
Org_num: 30954
All begin C5B28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 105 | ATP-dependent Clp protease ATP-binding subunit | |||
| 110 | R | Ngos1291ORF7750P (100% identity) | Ngo3818ORF130P | |
| 115 | sodium:proton exchanger | |||
| 120 | S | S.NgoWNII (100% identity) | S.Ngo3818ORF130P | |
| 125 | DNA damage-inducible protein D | |||
| 130 | M | M.Ngo4718ORF1640P (100% identity) | M.Ngo3818ORF130P | |
| 135 | ADP-L-glycero-D-mannoheptose-6-epimerase | |||
| 8180 | replication-associated recombination protein A | |||
| 8185 | R | NgoWOIP (100% identity) | GAGNNNNNTAC | Ngo3818ORF8210P |
| 8190 | hydroxyacid dehydrogenase | |||
| 8195 | S | S.Ngos1291I (100% identity) | GAGNNNNNTAC | S.Ngo3818ORF8210P |
| 8200 | 186 aa hypothetical protein | |||
| 8205 | 0 aa hypothetical protein | |||
| 8210 | M | M.Ngos1291I (100% identity) | GAGNNNNNTAC | M.Ngo3818ORF8210P |
| 8215 | ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12490 | replication initiation factor | |||
| 12495 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo3818ORF12505P | |
| ??? | R | NgoTFGB2ORF1219P (100% identity) | Ngo3818ORF12505P | |
| ??? | M | M.Ngos1291ORF65P (100% identity) | M.Ngo3818ORF12505P | |
| 12515 | 48 aa hypothetical protein | |||
| 8065 | 3-isopropylmalate dehydrogenase | |||
| 8070 | R | Ngos1291ORF9120P (100% identity) | GGNNCC | Ngo3818ORF8075P |
| 8075 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo3818ORF8075P |
| 8080 | 3-isopropylmalate dehydratase small subunit | |||
| 1050 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 1055 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo3818ORF1060P |
| 1060 | M | M.Ngos1291ORF10080P (100% identity) | GCCGGC | M.Ngo3818ORF1060P |
| 1065 | anthranilate synthase component I | |||
| 11795 | excinuclease ABC subunit UvrA | |||
| 11800 | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo3818ORF11805P |
| 11805 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo3818ORF11805P |
| 11810 | transposase | |||
| 6065 | group 2 glycosyl transferase | |||
| 6070 | R | Ngos1291ORF3515P (100% identity) | GGCC | Ngo3818ORF6075P |
| 6075 | M | M.NgoSH240ORFKP (100% identity) | GGCC | M.Ngo3818ORF6075P |
| 6080 | ribosome-recycling factor | |||
| 4380 | GTPase ObgE | |||
| 4385 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo3818ORF4385P |
| 4390 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo3818ORF4385P |
| 4395 | cysteine--tRNA ligase | |||
| 3130 | 0 aa hypothetical protein | |||
| 3135 | M | M.NgoCT213ORF40P (85% identity) | M.Ngo3818ORF3135P | |
| 3140 | DNA adenine methylase | |||
| 7605 | 93 aa hypothetical protein | |||
| ??? | R | Ngo4318ORF6975P (100% identity) | GGTGA | Ngo3818ORF7615P |
| 7615 | M | M1.NgoFQ35ORF11380P (100% identity) | GGTGA | M1.Ngo3818ORF7615P |
| 7620 | M | M1.NgoWSIII (100% identity) | GGTGA | M2.Ngo3818ORF7615P |
| 7625 | RNA-binding transcriptional accessory protein | |||
| 3140 | DNA adenine methylase | |||
| 3145 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo3818ORF3145P |
| 3150 | leucine--tRNA ligase | |||
| 360 | 86 aa hypothetical protein | |||
| 365 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo3818ORF365P |
| 370 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo3818ORF365P |
| ??? | H | H.Ngo4718ORF645P (100% identity) | H.Ngo3818ORF365P | |
| 380 | uroporphyrinogen decarboxylase | |||
| 385 | heme biosynthesis protein HemY | |||
| 390 | heme biosynthesis operon protein HemX | |||
| 395 | uroporphyrinogen-III synthase | |||
| 400 | 141 aa hypothetical protein | |||
| 405 | 0 aa hypothetical protein | |||
| 410 | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.Ngo3818ORF365P |
| 415 | SAM-dependent DNA methyltransferase | |||
| 410 | methyltransferase | |||
| 415 | RM | Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | Ngo3818ORF415P |
| 420 | IS1595 family transposase | |||
| 710 | phenylalanine--tRNA ligase subunit beta | |||
| 715 | R | NgoWSORF391P (100% identity) | Ngo3818ORF725P | |
| ??? | M | M.NgoTFGB2ORF299P (100% identity) | M.Ngo3818ORF725P | |
| 730 | V | V.NgoWSORF391P (100% identity) | V.Ngo3818ORF725P | |
| 735 | phenylalanine--tRNA ligase subunit alpha | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10955 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 10960 | R | NgoWPIIP (100% identity) | CCACC | Ngo3818ORF10965P |
| 10965 | M | M.Ngos1291ORF8455P (100% identity) | CCACC | M.Ngo3818ORF10965P |
| 2085 | tRNA pseudouridine(55) synthase TruB | |||
| ??? | M | M.Ngo4518ORF6780P (100% identity) | M.Ngo3818ORF2090P | |
| 2100 | R | Ngos1291ORF8930P (100% identity) | Ngo3818ORF2090P | |
| 2105 | alpha-hydroxy-acid oxidizing protein | |||