Ref: Hirk,S. et al. unpublished

REBASE ref # 26993

Contig set: 2,239,226 bp

GenBank #: PTPQ00000000 (NZ_PTPQ00000000)

REBASE acronym: Ngo3818

Org_num: 30954

 

All begin C5B28_

Type I
ORF Gene Most similar Specificity Name
 
105 ATP-dependent Clp protease ATP-binding subunit
110 R Ngos1291ORF7750P (100% identity) Ngo3818ORF130P
115 sodium:proton exchanger
120 S S.NgoWNII (100% identity) S.Ngo3818ORF130P
125 DNA damage-inducible protein D
130 M M.Ngo4718ORF1640P (100% identity) M.Ngo3818ORF130P
135 ADP-L-glycero-D-mannoheptose-6-epimerase
 
8180 replication-associated recombination protein A
8185 R NgoWOIP (100% identity) GAGNNNNNTAC Ngo3818ORF8210P
8190 hydroxyacid dehydrogenase
8195 S S.Ngos1291ORF9245P (100% identity) GAGNNNNNTAC S.Ngo3818ORF8210P
8200 186 aa hypothetical protein
8205 0 aa hypothetical protein
8210 M M.Ngos1291ORF9245P (100% identity) GAGNNNNNTAC M.Ngo3818ORF8210P
8215 ABC transporter
Type II
ORF Gene Most similar Specificity Name
 
12490 replication initiation factor
12495 V very short patch repair endonuclease V.Ngo3818ORF12505P
??? R NgoTFGB2ORF1219P (100% identity) Ngo3818ORF12505P
??? M M.Ngos1291ORF65P (100% identity) M.Ngo3818ORF12505P
12515 48 aa hypothetical protein
 
8065 3-isopropylmalate dehydrogenase
8070 R Ngos1291ORF9120P (100% identity) GGNNCC Ngo3818ORF8075P
8075 M DNA (cytosine-5-)-methyltransferase GGNNCC M.Ngo3818ORF8075P
8080 3-isopropylmalate dehydratase small subunit
 
1050 5-(carboxyamino)imidazole ribonucleotide
1055 R NgoWSORF1056P (100% identity) GCCGGC Ngo3818ORF1060P
1060 M DNA cytosine methyltransferase GCCGGC M.Ngo3818ORF1060P
1065 anthranilate synthase component I
 
11795 excinuclease ABC subunit UvrA
11800 R restriction endonuclease CCGCGG Ngo3818ORF11805P
11805 M DNA (cytosine-5-)-methyltransferase CCGCGG M.Ngo3818ORF11805P
11810 transposase
 
6065 group 2 glycosyl transferase
6070 R Ngos1291ORF3515P (100% identity) GGCC Ngo3818ORF6075P
6075 M M.NgoPII (100% identity) GGCC M.Ngo3818ORF6075P
6080 ribosome-recycling factor
 
4380 GTPase ObgE
4385 M DNA cytosine methyltransferase RGCGCY M.Ngo3818ORF4385P
4390 R HaeII family restriction endonuclease RGCGCY Ngo3818ORF4385P
4395 cysteine--tRNA ligase
 
3130 0 aa hypothetical protein
3135 M M.NgoCT213ORF40P (85% identity) M.Ngo3818ORF3135P
3140 DNA adenine methylase
 
7605 93 aa hypothetical protein
??? R Ngo4318ORF6975P (100% identity) GGTGA Ngo3818ORF7615P
7615 M M1.NgoFQ35ORF11380P (100% identity) GGTGA M1.Ngo3818ORF7615P
7620 M DNA (cytosine-5-)-methyltransferase GGTGA M2.Ngo3818ORF7615P
7625 RNA-binding transcriptional accessory protein
 
3140 DNA adenine methylase
3145 R restriction endonuclease GATC Ngo3818ORF3145P
3150 leucine--tRNA ligase
 
360 86 aa hypothetical protein
365 M DNA (cytosine-5-)-methyltransferase GCSGC M.Ngo3818ORF365P
370 R restriction endonuclease GCSGC Ngo3818ORF365P
??? H DEAD/DEAH box helicase H.Ngo3818ORF365P
380 uroporphyrinogen decarboxylase
385 heme biosynthesis protein HemY
390 heme biosynthesis operon protein HemX
395 uroporphyrinogen-III synthase
400 141 aa hypothetical protein
405 0 aa hypothetical protein
410 S methyltransferase GACNNNNNTGA S.Ngo3818ORF365P
415 SAM-dependent DNA methyltransferase
 
410 methyltransferase
415 RM SAM-dependent DNA methyltransferase GACNNNNNTGA Ngo3818ORF415P
420 IS1595 family transposase
 
710 phenylalanine--tRNA ligase subunit beta
715 R endonuclease Ngo3818ORF725P
??? M M.NgoTFGB2ORF299P (100% identity) M.Ngo3818ORF725P
730 V very short patch repair endonuclease V.Ngo3818ORF725P
735 phenylalanine--tRNA ligase subunit alpha
Type III
ORF Gene Most similar Specificity Name
 
10955 tRNA 2-thiocytidine(32) synthetase TtcA
10960 R NgoWPIIP (100% identity) CCACC Ngo3818ORF10965P
10965 M type III restriction endonuclease subunit M CCACC M.Ngo3818ORF10965P
 
2085 tRNA pseudouridine(55) synthase TruB
??? M M.Ngo4518ORF6780P (100% identity) M.Ngo3818ORF2090P
2100 R Ngos1291ORF8930P (100% identity) Ngo3818ORF2090P
2105 alpha-hydroxy-acid oxidizing protein