Neisseria gonorrhoeae 980036-18 |
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Putative Neisseria gonorrhoeae 980036-18 RM systems
Ref: Hirk,S. et al. unpublished
REBASE ref # 26993
Contig set: 2,227,585 bp
GenBank #: PTPS00000000 (NZ_PTPS00000000)
REBASE acronym: Ngo3618
Org_num: 30951
All begin C5B31_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 105 | ATP-dependent Clp protease ATP-binding subunit | |||
| 110 | R | Ngos1291ORF7750P (100% identity) | Ngo3618ORF130P | |
| 115 | sodium:proton exchanger | |||
| 120 | S | S.NgoWNII (100% identity) | S.Ngo3618ORF130P | |
| 125 | DNA damage-inducible protein D | |||
| 130 | M | M.Ngo4718ORF1640P (100% identity) | M.Ngo3618ORF130P | |
| 135 | ADP-L-glycero-D-mannoheptose-6-epimerase | |||
| 7940 | replication-associated recombination protein A | |||
| 7945 | R | NgoWOIP (100% identity) | GAGNNNNNTAC | Ngo3618ORF7970P |
| 7950 | hydroxyacid dehydrogenase | |||
| 7955 | S | S.Ngos1291I (100% identity) | GAGNNNNNTAC | S.Ngo3618ORF7970P |
| 7960 | 186 aa hypothetical protein | |||
| 7965 | 0 aa hypothetical protein | |||
| 7970 | M | M.Ngos1291I (100% identity) | GAGNNNNNTAC | M.Ngo3618ORF7970P |
| 7975 | ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12550 | replication initiation factor | |||
| 12555 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo3618ORF12565P | |
| ??? | R | NgoTFGB2ORF1219P (100% identity) | Ngo3618ORF12565P | |
| ??? | M | M.NgoWSORF1801P (100% identity) | M.Ngo3618ORF12565P | |
| 12575 | 48 aa hypothetical protein | |||
| 7825 | 3-isopropylmalate dehydrogenase | |||
| 7830 | R | Ngos1291ORF9120P (100% identity) | GGNNCC | Ngo3618ORF7835P |
| 7835 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo3618ORF7835P |
| 7840 | 3-isopropylmalate dehydratase small subunit | |||
| 1045 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 1050 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo3618ORF1055P |
| 1055 | M | M.Ngos1291ORF10080P (100% identity) | GCCGGC | M.Ngo3618ORF1055P |
| 1060 | anthranilate synthase component I | |||
| 4520 | GTPase ObgE | |||
| 4525 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo3618ORF4525P |
| 4530 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo3618ORF4525P |
| 4535 | cysteine--tRNA ligase | |||
| 2935 | ribosome-recycling factor | |||
| 2940 | M | M.NgoSH240ORFKP (100% identity) | GGCC | M.Ngo3618ORF2940P |
| 2945 | R | Ngos1291ORF3515P (100% identity) | GGCC | Ngo3618ORF2940P |
| 2950 | group 2 glycosyl transferase | |||
| 2070 | 0 aa hypothetical protein | |||
| 2075 | M | M.NgoCT213ORF40P (85% identity) | M.Ngo3618ORF2075P | |
| 2080 | DNA adenine methylase | |||
| 6900 | 93 aa hypothetical protein | |||
| 6905 | R | Ngo4718ORF4860P (100% identity) | GGTGA | Ngo3618ORF6910P |
| 6910 | M | M1.NgoFQ35ORF11380P (100% identity) | GGTGA | M1.Ngo3618ORF6910P |
| 6915 | M | M1.NgoWSIII (100% identity) | GGTGA | M2.Ngo3618ORF6910P |
| 6920 | RNA-binding transcriptional accessory protein | |||
| 2080 | DNA adenine methylase | |||
| 2085 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo3618ORF2085P |
| 2090 | leucine--tRNA ligase | |||
| 3830 | transposase | |||
| 3835 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo3618ORF3835P |
| 3840 | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo3618ORF3835P |
| 3845 | excinuclease ABC subunit UvrA | |||
| 360 | 86 aa hypothetical protein | |||
| 365 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo3618ORF365P |
| 370 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo3618ORF365P |
| ??? | H | H.Ngo4718ORF645P (100% identity) | H.Ngo3618ORF365P | |
| 380 | uroporphyrinogen decarboxylase | |||
| 405 | 0 aa hypothetical protein | |||
| 410 | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.Ngo3618ORF415P |
| 415 | RM | Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | Ngo3618ORF415P |
| 420 | IS1595 family transposase | |||
| 710 | phenylalanine--tRNA ligase subunit beta | |||
| 715 | R | NgoWSORF391P (100% identity) | Ngo3618ORF725P | |
| ??? | M | M.NgoWSORF391P (100% identity) | M.Ngo3618ORF725P | |
| 730 | V | V.NgoWSORF391P (100% identity) | V.Ngo3618ORF725P | |
| 735 | phenylalanine--tRNA ligase subunit alpha | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11800 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 11805 | R | NgoWPIIP (100% identity) | CCACC | Ngo3618ORF11810P |
| 11810 | M | M.Ngos1291ORF8455P (100% identity) | CCACC | M.Ngo3618ORF11810P |
| 11430 | alpha-hydroxy-acid oxidizing protein | |||
| 11435 | R | Ngos1291ORF8930P (100% identity) | Ngo3618ORF11440P | |
| ??? | M | type III restriction endonuclease HindVIP subunit M | M.Ngo3618ORF11440P | |