Neisseria gonorrhoeae 980035-18 |
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Putative Neisseria gonorrhoeae 980035-18 RM systems
Ref: Hirk,S. et al. unpublished
REBASE ref # 26993
Contig set: 2,234,140 bp
GenBank #: PTPT00000000 (NZ_PTPT00000000)
REBASE acronym: Ngo3518
Org_num: 30952
All begin C5B35_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3700 | ATP-dependent Clp protease ATP-binding subunit | |||
| 3705 | R | Ngos1291ORF7750P (100% identity) | Ngo3518ORF3725P | |
| 3710 | sodium:proton exchanger | |||
| 3715 | S | S.NgoWNII (100% identity) | S.Ngo3518ORF3725P | |
| 3720 | DNA damage-inducible protein D | |||
| 3725 | M | M.Ngo4718ORF1640P (100% identity) | M.Ngo3518ORF3725P | |
| 3730 | ADP-L-glycero-D-mannoheptose-6-epimerase | |||
| 7500 | replication-associated recombination protein A | |||
| 7505 | R | NgoWOIP (100% identity) | GAGNNNNNTAC | Ngo3518ORF7530P |
| 7510 | hydroxyacid dehydrogenase | |||
| 7515 | S | S.Ngos1291I (100% identity) | GAGNNNNNTAC | S.Ngo3518ORF7530P |
| 7520 | 186 aa hypothetical protein | |||
| 7525 | 0 aa hypothetical protein | |||
| 7530 | M | M.Ngos1291I (100% identity) | GAGNNNNNTAC | M.Ngo3518ORF7530P |
| 7535 | ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12515 | replication initiation factor | |||
| 12520 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo3518ORF12530P | |
| ??? | R | NgoTFGB2ORF1219P (100% identity) | Ngo3518ORF12530P | |
| ??? | M | M.Ngos1291ORF65P (100% identity) | M.Ngo3518ORF12530P | |
| 12540 | 48 aa hypothetical protein | |||
| 7385 | 3-isopropylmalate dehydrogenase | |||
| 7390 | R | Ngos1291ORF9120P (100% identity) | GGNNCC | Ngo3518ORF7395P |
| 7395 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo3518ORF7395P |
| 7400 | 3-isopropylmalate dehydratase small subunit | |||
| 40 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 45 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo3518ORF50P |
| 50 | M | M.Ngos1291ORF10080P (100% identity) | GCCGGC | M.Ngo3518ORF50P |
| 55 | anthranilate synthase component I | |||
| 11870 | excinuclease ABC subunit UvrA | |||
| 11875 | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo3518ORF11880P |
| 11880 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo3518ORF11880P |
| 11885 | transposase | |||
| 2965 | ribosome-recycling factor | |||
| 2970 | M | M.NgoSH240ORFKP (100% identity) | GGCC | M.Ngo3518ORF2970P |
| 2975 | R | Ngos1291ORF3515P (100% identity) | GGCC | Ngo3518ORF2970P |
| 2980 | group 2 glycosyl transferase | |||
| 6510 | 93 aa hypothetical protein | |||
| 6515 | R | Ngo4718ORF4860P (100% identity) | GGTGA | Ngo3518ORF6520P |
| 6520 | M | M1.NgoFQ35ORF11380P (100% identity) | GGTGA | M1.Ngo3518ORF6520P |
| 6525 | M | M1.NgoWSIII (100% identity) | GGTGA | M2.Ngo3518ORF6520P |
| 6530 | RNA-binding transcriptional accessory protein | |||
| 5045 | cysteine--tRNA ligase | |||
| 5050 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo3518ORF5055P |
| 5055 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo3518ORF5055P |
| 5060 | GTPase ObgE | |||
| 1165 | phenylalanine--tRNA ligase subunit alpha | |||
| 1170 | V | V.NgoWSORF391P (100% identity) | V.Ngo3518ORF1175P | |
| ??? | M | M.NgoWSORF391P (100% identity) | M.Ngo3518ORF1175P | |
| 1185 | R | NgoWSORF391P (100% identity) | Ngo3518ORF1175P | |
| 1190 | phenylalanine--tRNA ligase subunit beta | |||
| 1855 | leucine--tRNA ligase | |||
| 1860 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo3518ORF1865P |
| ??? | M | M.NgoCT213ORF40P (100% identity) | M.Ngo3518ORF1865P | |
| 1880 | 0 aa hypothetical protein | |||
| 1480 | IS1595 family transposase | |||
| 1485 | RM | Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | Ngo3518ORF1485P |
| 1490 | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.Ngo3518ORF1485P |
| 1495 | 0 aa hypothetical protein | |||
| 1520 | uroporphyrinogen decarboxylase | |||
| 1525 | H | H.Ngos1291ORF7560P (100% identity) | H.Ngo3518ORF1535P | |
| 1530 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo3518ORF1535P |
| 1535 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo3518ORF1535P |
| 1540 | 105 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12065 | M | M.Ngos1291ORF8455P (100% identity) | CCACC | M.Ngo3518ORF12065P |
| 12070 | R | NgoWPIIP (100% identity) | CCACC | Ngo3518ORF12065P |
| 12075 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 5680 | tRNA pseudouridine(55) synthase TruB | |||
| ??? | M | M.Ngo4518ORF6780P (100% identity) | M.Ngo3518ORF5685P | |
| 5695 | R | Ngos1291ORF8930P (100% identity) | Ngo3518ORF5685P | |
| 5700 | alpha-hydroxy-acid oxidizing protein | |||