|
Putative Bifidobacterium bifidum PRL2010 RM systems
Ref: Turroni,F. et al. Proc. Natl. Acad. Sci. U.S.A. (2010) In press
REBASE ref # 12104
Complete sequence: 2,214,656 bp
GenBank #: CP001840 (NC_014638)
REBASE acronym: Bbi2010
Org_num: 6382
All begin BBPR_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
174 | 481 aa Conserved hypothetical protein | |||
175 | M | M.Bbi8628BORF167P (99% identity) | M.Bbi2010ORF175P | |
177 | S | S.BloInORF2900P (100% identity) | S.Bbi2010ORF175P | |
178 | Abi family protein | |||
179 | R | Bbi8628BORF167P (99% identity) | Bbi2010ORF175P | |
180 | Mobilization protein | |||
1148 | ArgH Argininosuccinate lyase | |||
1149 | R | PmeBin303ORFGP (95% identity) | Bbi2010ORF1152P | |
1150 | Transcriptional regulator | |||
1151 | S | S.BbiS17ORF1093P (65% identity) | S.Bbi2010ORF1152P | |
1152 | M | M.BbiS6ORF5040P (99% identity) | M.Bbi2010ORF1152P | |
1153 | 280 aa Hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
14 | 84 aa Hypothetical protein | |||
15 | R | Blo7055ORF6905P (31% identity) | GTCGAC | Bbi2010ORF15P |
16 | Modification methylase | |||
15 | restriction enzyme | |||
16 | M | M.Bbi10347ORF357P (95% identity) | CTGCAG | M.Bbi2010ORF16P |
17 | R | R2.Bbi10347ORF357P (100% identity) | CTGCAG | Bbi2010ORF16P |
18 | 406 aa Hypothetical protein | |||
164 | Type II restriction-modification system | |||
165 | R | Bbi3115ORF1637P (98% identity) | GGCGCC | Bbi2010ORF165P |
166 | DNA-binding protein | |||
536 | 16S RNA methylase | |||
537 | R | BbiS6ORF8015P (100% identity) | Bbi2010ORF537P | |
538 | HflX GTP-binding protein | |||
782 | TnpB trasposase subunit B | |||
??? | M | M.PmeBin303ORFAP (100% identity) | GAATTC | M.Bbi2010ORFAP |
784 | 84 aa Hypothetical protein | |||
858 | 271 aa Conserved hypothetical protein | |||
859 | RM | Bbi8628BORF2159P (99% identity) | Bbi2010ORF859P | |
??? | M | Bbi7004ORF2877BP (71% identity) | M1.Bbi2010ORF859P | |
??? | M | BpsD2ORF11730AP (93% identity) | M2.Bbi2010ORF859P | |
863 | 207 aa Conserved hypothetical protein | |||
859 | Type III restriction system endonuclease | |||
??? | RM | Bbi7004ORF2877BP (100% identity) | Bbi2010ORF860P | |
863 | 207 aa Conserved hypothetical protein | |||
966 | 390 aa Conserved hypothetical protein | |||
967 | R | Bbi7004ORF2948P (100% identity) | GCSGC | Bbi2010ORF968P |
968 | M | M1.Bbi7004ORF2948P (96% identity) | GCSGC | M.Bbi2010ORF968P |
969 | COPII coat assembly protein Sec16 |