Campylobacter upsaliensis RM3195 |
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Putative Campylobacter upsaliensis RM3195 RM systems
Ref: Fouts,D.E. et al. PLoS Biol. 3 (1), E15 (2005)
REBASE ref # 8908
Contig set: 1,773,834 bp
GenBank #: AAFJ00000000
REBASE acronym: Cup
Org_num: 4100
All begin CUP, CUPA
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1730 | heat shock protein | |||
| 1731 | S | Type I restriction modification DNA specificity | S.CupORF1731P | |
| 1732 | restriction and modification enzyme CjeI | |||
| 1743 | D-alanine-activating enzyme, putative | |||
| 1744 | M | M.Hwi430ORFBP (91% identity) | M.CupORF1744P | |
| 1745 | type I specificity subunit HsdS | |||
| 1390 | colicin tolerance-like protein (tolB) | |||
| 1391 | M | M.Cup12264ORF75P (98% identity) | M.CupORF1391P | |
| 1392 | R | Cup6824ORF7620P (95% identity) | CupORF1391P | |
| 1393 | S | S1.Cup12264ORF75P (49% identity) | S.CupORF1391P | |
| 1394 | periplasmic protein Cj0111 | |||
| 201 | UDP-N-acetylmuramate--alanine ligase | |||
| 200 | R | Cup12264ORF579P (97% identity) | CupORF198P | |
| 199 | S | S.Cup12264ORF579P (96% identity) | S.CupORF198P | |
| 198 | M | M.Cup12264ORF579P (99% identity) | M.CupORF198P | |
| 196 | 190 aa conserved hypothetical integral membrane | |||
| 1003 | 327 aa conserved hypothetical protein | |||
| 1004 | S | S.Cup12264ORF1355P (96% identity) | S.CupORF1006P | |
| 1005 | 94 aa conserved hypothetical protein | |||
| 1006 | M | M.Hfe13102V (97% identity) | M.CupORF1006P | |
| 1007 | R | Cup12264ORF1355P (95% identity) | CupORF1006P | |
| 1008 | thioredoxin | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1075 | biotin carboxylase Cj1290c | |||
| 1074 | RM | Che51209ORF1555P (62% identity) | CupORF1074P | |
| 1073 | methyltransferase GidB | |||
| 1063 | 206 aa conserved hypothetical protein | |||
| ??? | M | M2.Cup12264ORF1408P (95% identity) | GAAGA | M2.CupORF1060P |
| 1060 | M | M1.Cup12264ORF1408P (92% identity) | GAAGA | M1.CupORF1060P |
| ??? | R | Cup12264ORF1408P (95% identity) | GAAGA | CupORF1060P |
| 1057 | peptide chain release factor 1 | |||
| 705 | thiamine biosynthesis protein ThiS | |||
| 706 | RM | Csp25113ORF1060P (84% identity) | CupORF706P | |
| 707 | succinyl-diaminopimelate desuccinylase | |||
| 234 | 150 aa conserved hypothetical protein | |||
| 235 | M | M.Hfe50ORF1847P (99% identity) | CCWGG | M.CupORF235P |
| 236 | 249 aa hypothetical protein | |||
| 233 | chorismate mutase/prephenate dehydratase | |||
| 234 | R | Cup736ORF6595P (72% identity) | ACNGT | CupORF237P |
| 235 | modification methylase | |||
| 236 | 249 aa hypothetical protein | |||
| 237 | M | M.Cup12264ORF624P (96% identity) | ACNGT | M.CupORF237P |
| 238 | 471 aa conserved hypothetical protein | |||
| 1664 | 208 aa hypothetical protein | |||
| 1665 | M | M.Cup12264ORF307P (98% identity) | M.CupORF1665P | |
| 1666 | acetyl-CoA synthetase | |||
| 1768 | imidazole glycerol phosphate synthase, glutamine | |||
| 1769 | M | M.Cup12264ORF208P (98% identity) | GANTC | M.CupORF1769P |
| 1770 | 243 aa hypothetical protein | |||
| 1660 | sulfate ABC transporter, ATP-binding protein, | |||
| 1661 | M | M.Cup12264ORF310P (99% identity) | M.CupORF1661P | |
| 1662 | 127 aa hypothetical protein | |||
| 1731 | Type I restriction modification DNA specificity | |||
| 1732 | RM | Hci798ORFYP (12% identity) | CupORF1732AP | |
| ??? | RM | 79 aa hypothetical protein | CupORF1732BP | |
| 1733 | methyl-accepting chemotaxis protein (tlpA) | |||
| 1734 | RM | restriction modification enzyme Cj1051c | CupORF1732CP | |
| 1735 | 55 aa hypothetical protein | |||
| 1437 | 31 aa hypothetical protein | |||
| 1438 | R | Che9613ORF6910P (83% identity) | CCNNGG | CupORF1439P |
| 1439 | M | M.Cup12264ORF25P (98% identity) | CCNNGG | M.CupORF1439P |
| 1440 | 977 aa hypothetical protein | |||
| 1283 | cytosine specific DNA methyltransferase | |||
| 1284 | R | Che9613ORF5940P (82% identity) | GCGC | CupORF1283P |
| 1285 | probable ferredoxin Cj1377c | |||
| 24 | 46 aa conserved hypothetical protein | |||
| 23 | M | M.Cup12264ORF351P (97% identity) | CATG | M.CupORF23P |
| 22 | DNA polymerase I (polA) | |||
| 1120 | HNH endonuclease domain protein | |||
| 1121 | M | M.Cup12264ORF1471P (99% identity) | CCGG | M.CupORF1121P |
| 1122 | GTP-binding protein, Era/ThdF family | |||
| 72 | 788 aa hypothetical protein | |||
| 73 | M | M.Cup12264ORF1885P (100% identity) | M.CupORF72P | |
| 74 | 99 aa hypothetical protein | |||
| 143 | 348 aa conserved hypothetical protein TIGR00423 | |||
| 142 | RM | Cup12264ORF525P (73% identity) | CupORF142P | |
| 1488 | ulcer associated adenine specific DNA | |||
| 1489 | M | M.Cup12264ORF1827P (99% identity) | GGATG | M1.CupORF1489P |
| 1490 | M | M1.HciORF2198P (94% identity) | GGATG | M2.CupORF1489P |
| 1491 | R | HbiAAQJHORF5740P (96% identity) | GGATG | CupORF1489P |
| 1492 | N-acetyl-gamma-glutamyl-phosphate reductase | |||
| 1487 | 42 aa hypothetical protein | |||
| 1488 | M | M.Cup12264ORF1828P (98% identity) | GAATTC | M.CupORF1488P |
| 1489 | ulcer associated adenine specific DNA | |||
| 1476 | 39 aa hypothetical protein | |||
| 1477 | M | M.Cup12264ORF1836P (96% identity) | TCNNGA | M.CupORF1477P |
| 1478 | DNA topoisomerase I | |||
| 1472 | glutamate synthase, small subunit | |||
| 1473 | R | Cup12264ORF1839P (99% identity) | GCNNGC | CupORF1474P |
| 1474 | M | M.Cup12264ORF1839P (97% identity) | GCNNGC | M.CupORF1474P |
| 1475 | glutamate synthase, large subunit | |||
| 1467 | R | Cup12264ORF1845P (81% identity) | CCTTC | CupORF1468P |
| 1468 | M | M.Cup12264ORF1845P (99% identity) | CCTTC | M.CupORF1468P |
| 1469 | 75 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | hypothetical protein | |||
| 800 | R | Cup12264ORF1165P (91% identity) | CupORF798P | |
| 801 | 74 aa hypothetical protein | |||
| 1576 | radical SAM domain protein protein | |||
| 1577 | M | M.Cup14913ORF75P (91% identity) | M.CupORF1577P | |
| 1578 | R | Cup12264ORF1743P (95% identity) | CupORF1577P | |
| 1579 | Na+/H+ antiporter family protein | |||