Clostridioides difficile DSM 29629 |
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Putative Clostridioides difficile DSM 29629 RM systems
Ref: Riedel,T. et al. Int. J. Med. Microbiol. 307 (6), 311-320 (2017)
REBASE ref # 27454
Complete sequence: 4,111,235 bp
GenBank #: CP016104
REBASE acronym: Cdi29629
Org_num: 31010
All begin CDIF29629_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3149 | 687 aa hypothetical protein | |||
| 3150 | R | Cdi3ORFAP (100% identity) | CANNNNNNNTAAAG | Cdi29629ORF3155P |
| 3151 | 142 aa hypothetical protein | |||
| 3152 | DNA polymerase subunit beta | |||
| 3153 | 102 aa hypothetical protein | |||
| 3154 | S | S.Cdi3ORFAP (100% identity) | CANNNNNNNTAAAG | S.Cdi29629ORF3155P |
| 3155 | M | M.Cdi3ORFAP (100% identity) | CANNNNNNNTAAAG | M.Cdi29629ORF3155P |
| 3156 | tagatose-bisphosphate aldolase | |||
| 3236 | 83 aa hypothetical protein | |||
| 3237 | R | Cdi3ORFDP (100% identity) | Cdi29629ORF3241P | |
| 3239 | S | S.Cdi3ORFDP (82% identity) | S.Cdi29629ORF3241P | |
| 3240 | 35 aa hypothetical protein | |||
| 3241 | M | M.Cdi28669ORF3210P (100% identity) | M.Cdi29629ORF3241P | |
| 3244 | C | C.Cdi3ORFDP (100% identity) | C.Cdi29629ORF3241P | |
| 3245 | 78 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2891 | phospholipase | |||
| 2892 | M | M.CdiRSS3ORF14215P (100% identity) | CAAAAA | M.Cdi29629ORF2892P |
| 2893 | badm/rrf2 family transcriptional regulator | |||
| 3245 | 78 aa hypothetical protein | |||
| 3246 | M | M.Cdi28669ORF3215P (100% identity) | M.Cdi29629ORF3246P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2187 | sigma-54-dependent transcriptional regulator | |||
| 2188 | R | PdiBJ08McrCP (100% identity) | Cdi29629McrCP | |
| 2189 | R | Cdi3McrBP (100% identity) | Cdi29629McrBP | |
| 2190 | cell division protein FtsZ | |||