Clostridioides difficile DSM 29627 |
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Putative Clostridioides difficile DSM 29627 RM systems
Ref: Riedel,T. et al. Int. J. Med. Microbiol. 307 (6), 311-320 (2017)
REBASE ref # 27454
Complete sequence: 4,209,547 bp
GenBank #: CP016102
REBASE acronym: Cdi29627
Org_num: 31008
All begin CDIF29627_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3199 | 687 aa hypothetical protein | |||
| 3200 | R | PdiBJ08ORFBP (100% identity) | TAGNNNNNRTGAA | Cdi29627ORF3205P |
| 3201 | 142 aa hypothetical protein | |||
| 3202 | DNA polymerase subunit beta | |||
| 3203 | 102 aa hypothetical protein | |||
| 3204 | S | S.PdiBJ08ORFBP (100% identity) | TAGNNNNNRTGAA | S.Cdi29627ORF3205P |
| 3205 | M | M.PdiBJ08ORFBP (100% identity) | TAGNNNNNRTGAA | M.Cdi29627ORF3205P |
| 3206 | tagatose-bisphosphate aldolase | |||
| 3312 | 48 aa hypothetical protein | |||
| 3313 | R | PdiBJ08ORFAP (100% identity) | AYGNNNNNNCTG | Cdi29627ORF3318P |
| 3314 | 300 aa hypothetical protein | |||
| 3315 | 97 aa hypothetical protein | |||
| 3316 | 150 aa hypothetical protein | |||
| 3317 | S | S.PdiBJ08ORFAP (100% identity) | AYGNNNNNNCTG | S.Cdi29627ORF3318P |
| 3318 | M | M.PdiBJ08ORFAP (100% identity) | AYGNNNNNNCTG | M.Cdi29627ORF3318P |
| 3319 | 159 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2933 | phospholipase | |||
| 2934 | M | M.PdiBJ08ORFCP (100% identity) | CAAAAA | M.Cdi29627ORF2934P |
| 2935 | badm/rrf2 family transcriptional regulator | |||
| 3465 | DNA-repair protein | |||
| 3466 | M | M.PmeBin248ORFCP (99% identity) | M.Cdi29627ORF3466P | |
| 3467 | conjugal transfer protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2231 | sigma-54-dependent transcriptional regulator | |||
| 2232 | R | PdiBJ08McrCP (100% identity) | Cdi29627McrCP | |
| 2233 | R | PdiBJ08McrBP (100% identity) | Cdi29627McrBP | |
| 2234 | cell division protein FtsZ | |||