Clostridioides difficile DSM 102860 |
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Putative Clostridioides difficile DSM 102860 RM systems
Ref: Riedel,T. et al. Int. J. Med. Microbiol. 307 (6), 311-320 (2017)
REBASE ref # 27454
Complete sequence: 4,253,785 bp
GenBank #: CP020379
REBASE acronym: Cdi102860
Org_num: 31006
All begin CDIF102860_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 669 | conjugative transposon protein | |||
| ??? | M | M.Cdi21371ORFBP (100% identity) | M.Cdi102860ORF670P | |
| 671 | S | S.CdiRSS13ORF16830P (100% identity) | S.Cdi102860ORF670P | |
| 672 | nucleotide-binding protein containing | |||
| 673 | R | CdiRSS13ORF16830P (100% identity) | Cdi102860ORF670P | |
| 674 | 78 aa hypothetical protein | |||
| 3465 | 687 aa hypothetical protein | |||
| 3466 | R | CdiRSS13ORF3235P (100% identity) | TAAANNNNGRTG | Cdi102860ORF3471P |
| 3467 | 142 aa hypothetical protein | |||
| 3468 | 126 aa hypothetical protein | |||
| 3469 | 102 aa hypothetical protein | |||
| 3470 | S | S.CdiRSS13ORF3235P (100% identity) | TAAANNNNGRTG | S.Cdi102860ORF3471P |
| 3471 | M | M.Cdi102978ORF3471P (100% identity) | TAAANNNNGRTG | M.Cdi102860ORF3471P |
| 3472 | tagatose-bisphosphate aldolase | |||
| 3553 | zinc metallopeptidase | |||
| 3554 | R | CdiRSS13ORF2820P (100% identity) | Cdi102860ORF3557P | |
| ??? | S | S.Cdi21371ORFFP (100% identity) | S.Cdi102860ORF3557P | |
| 3556 | DNA-damage-inducible protein D | |||
| 3557 | M | M.CdiRSS13ORF2820P (100% identity) | M.Cdi102860ORF3557P | |
| 3558 | 188 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 354 | 99 aa hypothetical protein | |||
| 355 | M | M.Cdi102978ORF355P (100% identity) | M.Cdi102860ORF355P | |
| 356 | 69 aa hypothetical protein | |||
| 1288 | 99 aa hypothetical protein | |||
| 1289 | M | M.Cdi102978ORF355P (100% identity) | M.Cdi102860ORF1289P | |
| 1290 | 69 aa hypothetical protein | |||
| 2594 | conjugal transfer protein | |||
| 2595 | M | M.CdiRSS13ORF7540P (100% identity) | M.Cdi102860ORF2595P | |
| 2596 | DNA-repair protein | |||
| 3173 | phospholipase | |||
| 3174 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi102860ORF3174P |
| 3175 | badm/rrf2 family transcriptional regulator | |||
| 4095 | 89 aa hypothetical protein | |||
| 4096 | R | CdiRSS13ORF205P (100% identity) | Cdi102860ORF4097P | |
| 4097 | M | M.CdiRSS13ORF205P (100% identity) | M.Cdi102860ORF4097P | |
| 4098 | ATP-dependent endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2376 | sigma-54-dependent transcriptional regulator | |||
| 2377 | R | CdiRSS13McrCP (100% identity) | Cdi102860McrCP | |
| 2378 | R | CdiRSS13McrBP (100% identity) | Cdi102860McrBP | |
| 2379 | cell division protein FtsZ | |||