Escherichia coli E308 |
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Putative Escherichia coli E308 RM systems
Ref: Yang,S. et al. unpublished
REBASE ref # 27449
| Sequence length: | GenBank #: | |
| Chromosome: | 4,786,360 bp | CP030281 |
| plasmid pLKSZ01: | 111,721 bp | CP030282 |
| plasmid pLKSZ02: | 113,645 bp | CP030283 |
| plasmid pLKSZ04: | 92,978 bp | CP030285 |
REBASE acronym: EcoE308
Org_num: 30992
All begin DQW89_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19560 | DNA helicase UvrD | |||
| 19565 | R | KpnEGKP3ORF20260P (100% identity) | EcoE308ORF19580P | |
| 19570 | DUF4268 domain-containing protein | |||
| 19575 | S | S.KpnEGKP3ORF20260P (100% identity) | S.EcoE308ORF19580P | |
| 19580 | M | M.KpnEGKP3ORF20260P (100% identity) | M.EcoE308ORF19580P | |
| 19585 | IS1 family transposase | |||
| 21335 | restriction endonuclease | |||
| 21340 | R | EcosS142ORF37770P (100% identity) | EcoE308ORF21345P | |
| 21345 | M | M.EcosS142ORF37770P (100% identity) | M.EcoE308ORF21345P | |
| 21350 | S | type I restriction endonuclease subunit S | S.EcoE308ORF21345P | |
| 21355 | glycosyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1985 | cell division protein DamX | |||
| 1990 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoE308DamP |
| 1995 | ribulose-phosphate 3-epimerase | |||
| 2645 | DUF2556 domain-containing protein | |||
| 2650 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoE308ORF2650P |
| 2655 | Fis family transcriptional regulator | |||
| 5830 | TraR/DksA family transcriptional regulator | |||
| 5835 | M | M.SflLIN17ORF14475P (100% identity) | GATC | M.EcoE308ORF5835P |
| 5840 | replication endonuclease | |||
| 7515 | recombination protein NinB | |||
| 7520 | M | M.Sfl9783ORF5079P (99% identity) | M.EcoE308ORF7520P | |
| 7525 | 290 aa hypothetical protein | |||
| 10010 | phosphohydrolase | |||
| 10015 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoE308DcmP |
| 10020 | V | V.SsoSE61DcmP (100% identity) | V.EcoE308DcmP | |
| 10025 | drug/metabolite exporter YedA | |||
| plasmid pLKSZ01 | ||||
| 25445 | 73 aa hypothetical protein | |||
| 25450 | M | M.Sen72779ORF22555P (100% identity) | M.EcoE308ORF25450P | |
| 25455 | 0 aa hypothetical protein | |||
| plasmid pLKSZ02 | ||||
| 25980 | 73 aa hypothetical protein | |||
| 25985 | M | M.Xca80ORFEP (100% identity) | M.EcoE308ORF25985P | |
| 25990 | 97 aa hypothetical protein | |||
| plasmid pLKSZ04 | ||||
| 27460 | IS1 family transposase | |||
| 27465 | R | SflFF67ORF22305P (100% identity) | GCWGC | EcoE308ORF27465P |
| 27470 | XRE family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21330 | GTPase | |||
| 21335 | R | SenHNK130MrrP (99% identity) | EcoE308MrrP | |
| 21340 | type I restriction-modification system | |||