Pediococcus pentosaceus SS1-3 |
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Putative Pediococcus pentosaceus SS1-3 RM systems
Ref: Nam,Y.-D. et al. unpublished
REBASE ref # 24816
| Sequence length: | GenBank #: | |
| Chromosome: | 1,752,312 bp | CP023008 |
| plasmid pSS1302: | 39,282 bp | CP023006 |
REBASE acronym: PpeSS13
Org_num: 30869
All begin CKK51_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pSS1302 | ||||
| 170 | plasmid replication initiation protein | |||
| 175 | S | DUF536 domain-containing protein | S.PpeSS13ORF175P | |
| 180 | restriction endonuclease | |||
| 50 | plasmid replication initiation protein | |||
| 55 | S | DUF536 domain-containing protein | S.PpeSS13ORF55P | |
| 60 | restriction endonuclease | |||
| 65 | helicase | |||
| 115 | S | DUF536 domain-containing protein | S.PpeSS13ORF115P | |
| 120 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pSS1302 | ||||
| 110 | plasmid replication initiation protein | |||
| 125 | RM | PpeSS13ORF65P (100% identity) | PpeSS13ORF125P | |
| 130 | 325 aa hypothetical protein | |||
| 175 | DUF536 domain-containing protein | |||
| 180 | RM | PpeSS13ORF60P (100% identity) | PpeSS13ORF180P | |
| 5 | helicase | |||
| 180 | restriction endonuclease | |||
| 5 | RM | PpeSS13ORF65P (100% identity) | PpeSS13ORF5P | |
| 10 | 325 aa hypothetical protein | |||
| 55 | DUF536 domain-containing protein | |||
| 60 | RM | PpeSS13ORF180P (100% identity) | PpeSS13ORF60P | |
| 65 | helicase | |||
| 60 | restriction endonuclease | |||
| 65 | RM | PpeSS13ORF5P (100% identity) | PpeSS13ORF65P | |
| 115 | DUF536 domain-containing protein | |||
| 115 | DUF536 domain-containing protein | |||
| 120 | RM | PpeSS13ORF60P (100% identity) | PpeSS13ORF120P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6940 | ABC transporter permease | |||
| 6945 | R | PpeCa4ORF7160P (100% identity) | PpeSS13ORF6945P | |
| 6950 | 0 aa hypothetical protein | |||