Helicobacter pylori KH2 |
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Putative Helicobacter pylori KH2 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,603,318 bp
GenBank #: PHMV00000000 (NZ_PHMV00000000)
REBASE acronym: HpyKH2
Org_num: 30825
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 18 | 631 aa hypothetical protein U063_1207 | |||
| ??? | R | HpySP308ORF5410BP (67% identity) | HpyKH2ORFZP | |
| 22 | M | M.HpyMA02ORF2000P (95% identity) | M.HpyKH2ORFZP | |
| 23 | S | S.HpyJ022ORF2295P (97% identity) | S.HpyKH2ORFZP | |
| 39 | HrgA like protein | |||
| ??? | M | M.HpyNAB47ORFK1P (92% identity) | M.HpyKH2ORFUP | |
| 44 | S | S.HpyJO2VI (94% identity) | S.HpyKH2ORFUP | |
| 45 | R | HpyKH39ORFVP (96% identity) | HpyKH2ORFUP | |
| 48 | hydroxyethylthiazole kinase | |||
| 154 | LPP20 lipofamily protein | |||
| 155 | S | S.HpyL034ORF6830P (97% identity) | S.HpyKH2ORFFP | |
| 156 | M | M.HpyKH39ORFSP (95% identity) | M.HpyKH2ORFFP | |
| 157 | R | HpyNP12ORF7390P (94% identity) | HpyKH2ORFFP | |
| 158 | M48 family peptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | RM | HpyID3ORF6310P (64% identity) | HpyKH2ORFEP | |
| 7 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 1 | M | M.HpyKH29ORFC1P (98% identity) | ATTAAT | M.HpyKH2ORFA1P |
| 2 | modification methylase VspI domain protein | |||
| 4 | 162 aa hypothetical protein | |||
| 6 | M | M.Hpy26AEK1ORFNP (97% identity) | ACGT | M.HpyKH2ORFB1P |
| 7 | R | HpyBG3ORF2400P (78% identity) | ACGT | HpyKH2ORFB1P |
| 10 | 100 aa hypothetical protein SE87_02515 | |||
| 18 | DNA-binding response regulator | |||
| 19 | R | HpyKH30ORFTP (97% identity) | GAAGA | HpyKH2ORFXP |
| 20 | M | M2.HpyKH7ORFUP (99% identity) | GAAGA | M1.HpyKH2ORFXP |
| 21 | M | M2.HpyG020X (94% identity) | GAAGA | M2.HpyKH2ORFXP |
| 22 | site-specific DNA-methyltransferase | |||
| 26 | UDP-N-acetylmuramate dehydrogenase | |||
| 27 | R | HpyKH16ORFCP (100% identity) | GAATTC | HpyKH2ORFIP |
| 28 | M | M.HpyKH29ORFHP (100% identity) | GAATTC | M.HpyKH2ORFIP |
| 29 | glycosyltransferase family 8 protein | |||
| 35 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 36 | M | M.HpyKH16ORFFP (100% identity) | GCGC | M.HpyKH2ORFHP |
| 37 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 19 | ATP-dependent helicase | |||
| 21 | M | M.HpyCOL104IX (91% identity) | GTNNAC | M.HpyKH2ORFDP |
| 22 | R | HpyMA17XIIP (98% identity) | GTNNAC | HpyKH2ORFDP |
| 23 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 45 | 969 aa hypothetical protein | |||
| 48 | RM | HpyBS22ORF55P (78% identity) | HpyKH2ORFQP | |
| 50 | 407 aa hypothetical protein HMPREF1411_00815 | |||
| 40 | Laminin subunit alpha-2 precursor | |||
| 43 | R | HpyS64ORFVP (100% identity) | TCNNGA | HpyKH2ORFCP |
| 44 | M | M.HpyKH16ORFDP (100% identity) | TCNNGA | M.HpyKH2ORFCP |
| 45 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 46 | serine acetyltransferase | |||
| 48 | R | HpyCOL203IP (80% identity) | HpyKH2ORFVP | |
| 52 | M | M.HpyMM08I (96% identity) | M.HpyKH2ORFVP | |
| 53 | HAD family hydrolase | |||
| 74 | outer membrane protein | |||
| 75 | R | HpyKH40ORFHP (98% identity) | CCATC | HpyKH2ORFOP |
| 76 | M | M1.HpySP307III (93% identity) | CCATC | M1.HpyKH2ORFOP |
| 77 | M | M2.HpyKH39ORFIP (98% identity) | CCATC | M2.HpyKH2ORFOP |
| 78 | YjgP/YjgQ family permease | |||
| 120 | ComF family protein | |||
| 121 | RM | Hpy173ORF160P (96% identity) | HpyKH2ORFNP | |
| 122 | type IIS R-M system restriction enzyme | |||
| 123 | S | S.HpyLI26ORF7085P (61% identity) | S.HpyKH2ORFNP | |
| 124 | DNA polymerase I | |||
| 119 | 156 aa hypothetical protein | |||
| 120 | M | M.Hpyoh1ORF4535P (100% identity) | M.HpyKH2ORFBP | |
| 121 | translation elongation factor 4 | |||
| 179 | outer membrane protein | |||
| ??? | RM | HpyKH40ORFTP (89% identity) | HpyKH2ORFTP | |
| 183 | -binding protein | |||
| 178 | 68 aa hypothetical protein | |||
| 179 | M | M.HpyKH16ORFAP (99% identity) | TGCA | M.HpyKH2ORFGP |
| 180 | R | HpyKH16ORFAP (100% identity) | TGCA | HpyKH2ORFGP |
| 181 | cytochrome c1 | |||
| 230 | chaperone protein ClpB | |||
| 233 | M | M.HpyU411V (100% identity) | CCGG | M.HpyKH2ORFRP |
| 234 | R | HpyKH16ORFOP (97% identity) | CCGG | HpyKH2ORFRP |
| 235 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 235 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 236 | M | M.HpyKH29ORFMP (96% identity) | TCGA | M.HpyKH2ORFSP |
| 237 | exodeoxyribonuclease VII large subunit | |||
| 328 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 329 | M | M1.HpySP324IV (97% identity) | CCTC | M1.HpyKH2ORFLP |
| 331 | M | M2.Hpy173AORFQP (98% identity) | CCTC | M2.HpyKH2ORFLP |
| 332 | R | HpyKH16ORFKP (99% identity) | CCTC | HpyKH2ORFLP |
| 333 | site-specific DNA-methyltransferase | |||
| 332 | restriction endonuclease | |||
| 333 | M | M.HpyKH29ORFIP (100% identity) | GTSAC | M.HpyKH2ORFMP |
| 334 | R | HpyKH16ORFJP (99% identity) | GTSAC | HpyKH2ORFMP |
| 335 | sodium/proline symporter | |||
| 396 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| ??? | R | HpyKH29ORFKP (100% identity) | HpyKH2ORFKP | |
| 400 | M | M.HpyKH6ORFGP (89% identity) | M.HpyKH2ORFKP | |
| 401 | alpha-1,2-fucosyltransferase | |||
| 414 | restriction endonuclease | |||
| 415 | M | M.HpyI002ORF535P (99% identity) | M.HpyKH2ORFJP | |
| 416 | 5'-nucleotidase protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21 | DUF1887 family protein | |||
| 22 | M | M.HpyKH31ORFUP (56% identity) | M1.HpyKH2ORFYP | |
| 23 | M | adenine-specific DNA methylase | M2.HpyKH2ORFYP | |
| 24 | R | HpyUM084ORF8275P (93% identity) | HpyKH2ORFYP | |
| 26 | 66 aa hypothetical protein | |||
| 41 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyF014ORF7605P (96% identity) | M.HpyKH2ORFPP | |
| 45 | R | HpyKH17ORFXP (95% identity) | HpyKH2ORFPP | |
| 48 | class I SAM-dependent DNA methyltransferase | |||
| 42 | DNA/RNA non-specific endonuclease | |||
| 43 | M | M.HpyI029ORF6585P (95% identity) | M.HpyKH2ORFWP | |
| 44 | R | HpyNP12ORF325P (90% identity) | HpyKH2ORFWP | |
| 87 | 81 aa hypothetical protein HMPREF1403_00513 | |||
| 88 | M | M.HpyBG10XIII (97% identity) | M.HpyKH2ORFAP | |
| 89 | R | HpyKH16ORFHP (98% identity) | HpyKH2ORFAP | |
| 90 | 2-oxoglutarate:acceptor oxidoreductase | |||