Pseudomonas species phDV1 |
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Putative Pseudomonas species phDV1 RM systems
Ref: Xie,H. and Tsiotis,G. unpublished
REBASE ref # 27375
Complete sequence: 4,727,682 bp
GenBank #: CP031606
REBASE acronym: PspDV1
Org_num: 30707
All begin DZC76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 860 | sigma-54-dependent Fis family transcriptional | |||
| 865 | R | PpuR51ORF1110P (98% identity) | PspDV1ORF870P | |
| 870 | M | M.PaeLWI (94% identity) | M.PspDV1ORF870P | |
| 875 | S | S.HspRR6ORF1180P (62% identity) | S.PspDV1ORF870P | |
| 880 | 210 aa hypothetical protein | |||
| 1900 | C4-dicarboxylate ABC transporter | |||
| 1905 | M | M.Psp3P5ORF11915P (98% identity) | M.PspDV1ORF1905P | |
| 1910 | DNA damage-inducible protein D | |||
| 1915 | S | S.Rsp18449ORF14370P (46% identity) | S.PspDV1ORF1905P | |
| 1920 | R | Psp3P5ORF11915P (97% identity) | PspDV1ORF1905P | |
| 1925 | transketolase | |||
| 8060 | IS21 family transposase | |||
| 8065 | R | Psp2021ORF18720P (99% identity) | PspDV1ORF8075P | |
| 8070 | HNH endonuclease | |||
| 8075 | M | M.Psp2021ORF18720P (97% identity) | M.PspDV1ORF8075P | |
| 8080 | 323 aa hypothetical protein | |||
| 8085 | S | S.Pst442ORF7105P (69% identity) | S.PspDV1ORF8075P | |
| 8090 | DUF91 domain-containing protein | |||
| 17355 | 213 aa hypothetical protein | |||
| 17360 | R | Pae85ORFDP (98% identity) | PspDV1ORF17385P | |
| 17365 | DUF3320 domain-containing protein | |||
| 17370 | restriction endonuclease | |||
| 17375 | restriction endonuclease | |||
| ??? | 883 aa hypothetical protein Q088_04414 | |||
| 17380 | S | S.CpiND17ORF18970P (43% identity) | S.PspDV1ORF17385P | |
| 17385 | M | M.Psp3919ORF16800P (96% identity) | M.PspDV1ORF17385P | |
| 17390 | 167 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4785 | 4-hydroxy-tetrahydrodipicolinate reductase | |||
| 4790 | R | Psp17CORF19355P (100% identity) | PspDV1ORF4795P | |
| 4795 | M | M.Pol4132ORF17730P (99% identity) | M.PspDV1ORF4795P | |
| 4800 | carbamoyl-phosphate synthase small subunit | |||
| 9465 | IS200/IS605 family transposase | |||
| 9470 | M | M.Pta8067ORF982P (56% identity) | M.PspDV1ORF9470P | |
| 9475 | R | PspQ13ORF12655P (37% identity) | PspDV1ORF9470P | |
| 9480 | 282 aa hypothetical protein | |||
| 13215 | DNA topoisomerase III | |||
| ??? | M | M.SmaCSM2ORF7750P (100% identity) | M.PspDV1ORF13220P | |
| 13225 | 185 aa hypothetical protein | |||
| 18220 | DUF262 domain-containing protein | |||
| 18225 | M | M.PalMRCP2ORFEP (77% identity) | M.PspDV1ORF18225P | |
| 18230 | DNA-binding protein | |||
| 21240 | DUF4102 domain-containing protein | |||
| 21245 | RM | Pps5344ORF4076P (99% identity) | PspDV1ORF21245P | |
| 21250 | XRE family transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11815 | site-specific DNA-methyltransferase | |||
| 11820 | M | M.Pol4132ORF12860P (99% identity) | M.PspDV1ORF11820P | |
| 11825 | R | Psi32246ORF995P (98% identity) | PspDV1ORF11820P | |
| 11830 | amidohydrolase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17365 | DUF3320 domain-containing protein | |||
| 17370 | R | PpuXPP1McrCP (93% identity) | PspDV1McrCP | |
| ??? | R | PspBJP69McrBP (65% identity) | PspDV1McrBP | |
| 17380 | restriction endonuclease subunit S | |||