Cupriavidus taiwanensis |
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Putative Cupriavidus taiwanensis RM systems
Ref: Clerissi,C. unpublished
REBASE ref # 27304
| Sequence length: | GenBank #: | |
| chromosome CBM2636: | 3,518,354 bp | LT984813 |
| chromosome CBM2638_a: | 3,514,475 bp | LT977070 |
| chromosome I: | 3,612,400 bp | LT991976 |
| chromosome I: | 3,614,347 bp | LT984803 |
| chromosome I: | 3,638,823 bp | LT984806 |
| chromosome III: | 3,387,519 bp | LT984801 |
| plasmid CBM2636p: | 577,503 bp | LT984815 |
| plasmid I: | 586,796 bp | LT984799 |
| plasmid III: | 588,084 bp | LT984808 |
| plasmid III: | 599,597 bp | LT984805 |
REBASE acronym:
Org_num:
All begin CBM2590_, CBM2590_P, CBM2596_, CBM2596_P, CBM2607_, CBM2607_P, CBM2636_, CBM2636_P, CBM2638_A, CT19425_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome CBM2636 | ||||
| 10264 | conserved protein of unknown function | |||
| 10265 | M | M.TtaMB2ORFIP (83% identity) | M.Cta66322ORF10265P | |
| 10266 | DNA-binding protein | |||
| 10267 | S | S.Bps7504ORF5097P (47% identity) | S.Cta66322ORF10265P | |
| 10268 | R | Bps7504ORF5097P (76% identity) | Cta66322ORF10265P | |
| 10269 | Predicted metal-dependent hydrolase | |||
| chromosome CBM2638_a | ||||
| 10279 | DNA gyrase, subunit B (type II topoisomerase) | |||
| 10280 | R | BpsBPHN1ORF3520P (93% identity) | Cta65033ORF10282P | |
| 10281 | S | S.NmoM1ORF1459P (50% identity) | S.Cta65033ORF10282P | |
| 10282 | M | M.BpsBPHN1ORF3520P (83% identity) | M.Cta65033ORF10282P | |
| 10283 | protein of unknown function | |||
| chromosome I | ||||
| 80055 | conserved protein of unknown function | |||
| 80056 | R | CtaORF832P (95% identity) | Cta1945ORF80060P | |
| 80057 | conserved protein of unknown function | |||
| 80058 | S | S.BlaMT34ORF3270P (45% identity) | S.Cta1945ORF80060P | |
| 80059 | 31 aa hypothetical protein | |||
| ??? | M | M.CtaORF832P (74% identity) | M.Cta1945ORF80060P | |
| 80062 | conserved membrane protein of unknown function | |||
| chromosome I | ||||
| 10005 | protein of unknown function | |||
| 10006 | M | DNA methylase M (fragment) | M.Cta6160ORF10006P | |
| 10007 | Restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome CBM2636 | ||||
| 10012 | conserved protein of unknown function | |||
| 10013 | RM | RsoWR1ORFBP (87% identity) | Cta66322ORF10013P | |
| 10014 | protein of unknown function | |||
| 12238 | Tryptophan synthase alpha chain | |||
| 12239 | M | M.Cta65033ORF40548P (99% identity) | M.Cta66322ORF12239P | |
| 12240 | tryptophan synthase beta chain | |||
| chromosome CBM2638_a | ||||
| 10285 | protein of unknown function | |||
| ??? | R | Psp330ORF20605P (36% identity) | Cta65033ORF10288P | |
| 10288 | M | M.SspTTNORF160P (45% identity) | M.Cta65033ORF10288P | |
| 10290 | V | V.RspLJ20ORF19135P (53% identity) | V.Cta65033ORF10288P | |
| 10292 | protein of unknown function | |||
| 40547 | tryptophan synthase, alpha chain | |||
| 40548 | M | M.Cta66322ORF12239P (99% identity) | M.Cta65033ORF40548P | |
| 40549 | tryptophan synthase, beta subunit | |||
| chromosome I | ||||
| 110238 | HNH endonuclease | |||
| 110239 | M | M.AxyR8ORF59500P (38% identity) | M.Cta1945ORF110239P | |
| 110241 | conserved protein of unknown function | |||
| 110241 | conserved protein of unknown function | |||
| 110242 | M | M.Lca55ORF5277P (21% identity) | M.Cta1945ORF110242P | |
| 110243 | conserved protein of unknown function | |||
| chromosome I | ||||
| 10004 | DNA gyrase, subunit B | |||
| ??? | M | M.Rsl19594ORF1853P (44% identity) | M.Cta3679ORF10005P | |
| 10006 | conserved protein of unknown function | |||
| 20947 | Tryptophan synthase alpha chain | |||
| 20948 | M | M.Cal732ORF103531P (98% identity) | M.Cta3679ORF20948P | |
| 20949 | tryptophan synthase beta chain | |||
| 21114 | conserved protein of unknown function | |||
| 21116 | RM | RpiDORF2670P (59% identity) | Cta3679ORF21116P | |
| 21117 | Helicase SNF2 | |||
| chromosome I | ||||
| 12358 | Tryptophan synthase alpha chain | |||
| 12359 | M | M.CnaX1ORF16300P (98% identity) | M.Cta6160ORF12359P | |
| 12360 | tryptophan synthase beta chain | |||
| chromosome III | ||||
| 21745 | Tryptophan synthase alpha chain | |||
| 21746 | M | M.CtaORF2111P (99% identity) | M.Cta6041ORF21746P | |
| 21747 | tryptophan synthase beta chain | |||
| plasmid CBM2636p | ||||
| 10006 | protein of unknown function | |||
| 10007 | RM | Cta66294ORFAP (100% identity) | Cta66322ORF10007P | |
| 10008 | protein of unknown function | |||
| 10201 | Phage Gp37Gp68 | |||
| 10202 | M | M.CtaORF172P (100% identity) | M.Cta66322ORF10202P | |
| 10203 | conserved protein of unknown function | |||
| plasmid I | ||||
| 71 | Phage Gp37Gp68 | |||
| 72 | M | M.CtaORF172P (99% identity) | M.Cta6041ORF72P | |
| 73 | conserved protein of unknown function | |||
| plasmid III | ||||
| 10006 | protein of unknown function | |||
| 10007 | RM | Cta66322ORF10007P (100% identity) | Cta6160ORF10007P | |
| 10008 | conserved protein of unknown function | |||
| 10171 | Phage Gp37Gp68 | |||
| 10172 | M | M.CtaORF172P (100% identity) | M.Cta6160ORF10172P | |
| 10173 | conserved protein of unknown function | |||
| plasmid III | ||||
| 10006 | protein of unknown function | |||
| 10007 | RM | Cta66322ORF10007P (100% identity) | Cta3679ORF10007P | |
| 10008 | conserved protein of unknown function | |||
| 10204 | Phage Gp37Gp68 | |||
| 10205 | M | M.CtaORF172P (100% identity) | M.Cta3679ORF10205P | |
| 10206 | conserved protein of unknown function | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 30056 | Abortive phage resistance protein | |||
| 30057 | M | M.PaeSG17MORF111345P (86% identity) | M.Cta1945ORF30057P | |
| 30058 | R | Pae07ORF23950P (90% identity) | Cta1945ORF30057P | |
| 30059 | conserved protein of unknown function | |||
| plasmid CBM2636p | ||||
| 10002 | M | M.CtaORF1P (100% identity) | M.Cta66322ORF10002P | |
| 10003 | R | CtaORF1P (100% identity) | Cta66322ORF10002P | |
| 10004 | protein of unknown function | |||
| plasmid III | ||||
| 10002 | M | M.CtaORF1P (100% identity) | M.Cta6160ORF10002P | |
| 10003 | R | CtaORF1P (100% identity) | Cta6160ORF10002P | |
| 10004 | protein of unknown function | |||
| plasmid III | ||||
| 10002 | M | M.CtaORF1P (100% identity) | M.Cta3679ORF10002P | |
| 10003 | R | CtaORF1P (100% identity) | Cta3679ORF10002P | |
| 10004 | protein of unknown function | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome III | ||||
| 10008 | Restriction endonuclease subunit R | |||
| 10009 | R | BspRPE64MrrP (67% identity) | Cta6041MrrP | |
| 10010 | protein of unknown function | |||