Escherichia coli ETEC H10407 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli ETEC H10407 RM systems
Ref: Crossman,L.C. et al. J. Bacteriol. 192 (21), 5822-5831 (2010)
REBASE ref # 12065
| Sequence length: | GenBank #: | |
| Chromosome: | 5,153,435 bp | FN649414 |
| plasmid p666: | 66,681 bp | FN649417 |
| plasmid p948: | 94,797 bp | FN649418 |
REBASE acronym: EcoETEC
Org_num: 4632
All begin ETEC_, ETEC_p666_, ETEC_p948_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1949 | hydrolase | |||
| 1950 | R | EcoM9ORF9685P (100% identity) | EcoETECORF1953P | |
| 1951 | 227 aa conserved hypothetical protein | |||
| 1952 | S | S.EcoM9ORF9685P (100% identity) | S.EcoETECORF1953P | |
| 1953 | M | M.EcoSTEC346ORFGP (100% identity) | M.EcoETECORF1953P | |
| 1954 | 388 aa hypothetical protein | |||
| 3910 | 563 aa conserved hypothetical protein | |||
| 3911 | S | S.SflN116ORF3940P (100% identity) | S.EcoETECORF3912P | |
| 3912 | M | M.SflN116ORF3940P (100% identity) | M.EcoETECORF3912P | |
| 3913 | R | Eco470aORF21280P (100% identity) | EcoETECORF3912P | |
| 3914 | 36 aa conserved hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1209 | 94 aa conserved hypothetical protein | |||
| 1210 | M | M.EcoE1779ORF3443P (100% identity) | M.EcoETECORF1210P | |
| 1211 | phage protein | |||
| 2061 | membrane protein | |||
| 2062 | V | V.SflSTLE3DcmP (100% identity) | V.EcoETECDcmP | |
| 2063 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoETECDcmP |
| 2064 | phosphohydrolase | |||
| 3520 | DNA-binding protein | |||
| 3521 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoETECORF3521P |
| 3522 | exported protein | |||
| 3636 | ribulose-phosphate 3-epimerase | |||
| 3637 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoETECDamP |
| 3638 | DamX protein | |||
| 4477 | 65 aa hypothetical protein | |||
| 4478 | RM | Eco470aORF24420P (100% identity) | CTGAAG | EcoETECORF4478P |
| 4479 | M | M.Eco470aORF24420P (100% identity) | CTGAAG | M.EcoETECORF4478P |
| 4480 | 66 aa conserved hypothetical protein | |||
| 4696 | antitermination protein q homolog from | |||
| 4698 | M | M.Sso63633ORF22290P (100% identity) | M.EcoETECORF4698P | |
| 4699 | lysis protein S homolog from lambdoid prophage | |||
| plasmid p666 | ||||
| 530 | 73 aa conserved hypothetical protein | |||
| 540 | M | M.Eco10407ORFAP (100% identity) | M.EcoETECORF540P | |
| 550 | plasmid stable inheritance protein (ParA | |||
| plasmid p948 | ||||
| 640 | Plasmid SOS inhibition protein | |||
| 650 | M | M.Ecos671ORFHP (100% identity) | M.EcoETECORF650P | |
| 660 | 41 aa conserved hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4473 | isehe3 transposase protein | |||
| 4474 | R | Eco470aMcrBP (100% identity) | EcoETECMcrBP | |
| 4475 | R | Eco470aMcrCP (100% identity) | EcoETECMcrCP | |
| 4476 | type I restriction-modification | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 277 | 162 aa conserved hypothetical protein | |||
| 277 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoETECORF277P |
| 277 | LexA repressor-like DNA repair protein | |||
| 800 | phage recombination Protein | |||
| 801 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoETECORF801P |
| 802 | 123 aa conserved hypothetical protein | |||
| 2660 | 99 aa conserved hypothetical protein | |||
| 2661 | M | M.SflFF34ORF8575P (100% identity) | GATC | M.EcoETECORF2661P |
| 2662 | serine/threonine-specific protein phosphatase 1 | |||
| 4320 | 162 aa conserved hypothetical protein | |||
| 4321 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoETECORF4321P |
| 4322 | LexA repressor | |||
| 4688 | 164 aa conserved hypothetical protein | |||
| 4689 | M | M.Eco470aORF25625P (100% identity) | GATC | M.EcoETECORF4689P |
| 4690 | bacteriophage v crossover junction | |||