Escherichia coli WH398 |
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Putative Escherichia coli WH398 RM systems
Ref: Xu,A. et al. unpublished
REBASE ref # 27038
Contig set: 5,172,319 bp
GenBank #: PSNR00000000 (NZ_PSNR00000000)
REBASE acronym: EcoWH398
Org_num: 30185
All begin C4K42_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 25285 | M | DNA methyltransferase | M.EcoWH398ORF25285P | |
| 25290 | DNA-binding protein | |||
| 26415 | R | EcoHs3IIIP (39% identity) | EcoWH398ORF26425P | |
| 26420 | S | S.Ecos641ORF3050P (100% identity) | S.EcoWH398ORF26425P | |
| 26425 | M | DNA methyltransferase | M.EcoWH398ORF26425P | |
| 27190 | R | type I restriction endonuclease | EcoWH398ORF27190P | |
| 26835 | S | S.EcoW087ORF4400P (100% identity) | S.EcoWH398ORF26840P | |
| 26840 | M | DNA methyltransferase | M.EcoWH398ORF26840P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 24325 | osmoprotectant transport activator ProQ | |||
| 24330 | M | M.SflFF24DndBP (100% identity) | M.EcoWH398DndBP | |
| 24335 | DNA phosphorothioation system sulfurtransferase | |||
| 24330 | DNA sulfur modification protein DndB | |||
| 24335 | M | M.SflFF24DndCP (100% identity) | M.EcoWH398DndCP | |
| 24340 | DNA sulfur modification protein DndD | |||
| 21575 | NinE family protein | |||
| 21580 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoWH398ORF21580P |
| 21585 | recombination protein NinB | |||
| 24335 | DNA phosphorothioation system sulfurtransferase | |||
| 24340 | M | M.SflFF24DndDP (100% identity) | M.EcoWH398DndDP | |
| 24345 | DNA sulfur modification protein DndE | |||
| 18850 | lysis protein S | |||
| 18855 | M | M.Sso63633ORF22290P (100% identity) | M.EcoWH398ORF18855P | |
| 18860 | 67 aa hypothetical protein | |||
| 24340 | DNA sulfur modification protein DndD | |||
| 24345 | M | M.SflFF24DndEP (100% identity) | M.EcoWH398DndEP | |
| 24350 | DGQHR domain-containing protein | |||
| 23830 | 73 aa hypothetical protein | |||
| 23835 | M | M.SenS1545ORF25100P (100% identity) | M.EcoWH398ORF23835P | |
| 23840 | 97 aa hypothetical protein | |||
| 24360 | 113 aa hypothetical protein | |||
| 24365 | R | EcotcmA3DptHP (100% identity) | EcoWH398DptHP | |
| 24370 | DNA phosphorothioation-dependent restriction | |||
| 18895 | LexA family transcriptional regulator | |||
| 18900 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoWH398ORF18900P |
| 18905 | PerC family transcriptional regulator | |||
| 24365 | DNA phosphorothioation-dependent restriction | |||
| 24370 | R | SflFF24DptGP (100% identity) | EcoWH398DptGP | |
| 24375 | DNA phosphorothioation-dependent restriction | |||
| 17450 | DUF2556 domain-containing protein | |||
| 17455 | M | M.EcoE44ORF14460P (100% identity) | ATGCAT | M.EcoWH398ORF17455P |
| 17460 | Fis family transcriptional regulator | |||
| 24370 | DNA phosphorothioation-dependent restriction | |||
| 24375 | R | SflFF24DptFP (100% identity) | EcoWH398DptFP | |
| 24380 | integrase | |||
| 14910 | EamA family transporter | |||
| 14915 | V | V.EcosEC7DcmP (100% identity) | V.EcoWH398DcmP | |
| 14920 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.EcoWH398DcmP |
| 14925 | phosphohydrolase | |||
| 9250 | cell division protein DamX | |||
| 9255 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoWH398DamP |
| 9260 | ribulose-phosphate 3-epimerase | |||