Helicobacter pylori KH1 |
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Putative Helicobacter pylori KH1 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,654,914 bp
GenBank #: PHMW00000000 (NZ_PHMW00000000)
REBASE acronym: HpyKH1
Org_num: 30113
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | S | S.Hpy67ORF468P (91% identity) | S.HpyKH1ORFXP | |
| 2 | M | M.HpyCA22ORF4330P (96% identity) | M.HpyKH1ORFXP | |
| ??? | R | HpyR02ORF2135P (90% identity) | HpyKH1ORFXP | |
| 6 | 631 aa hypothetical protein U063_1207 | |||
| 68 | M48 family peptidase | |||
| 71 | R | HpyR08VIIP (94% identity) | HpyKH1ORFEP | |
| 72 | M | M.HpyGRE042ORF7290P (95% identity) | M.HpyKH1ORFEP | |
| 73 | S | S.Hpy1846ORF950P (97% identity) | S.HpyKH1ORFEP | |
| 74 | glutamine--fructose-6-phosphate transaminase | |||
| 179 | hydroxyethylthiazole kinase | |||
| ??? | R | HpyKH9ORFA1P (68% identity) | HpyKH1ORFLP | |
| 184 | M | M.HpyB45ORFQP (83% identity) | M.HpyKH1ORFLP | |
| 186 | PAP2 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | outer membrane beta-barrel protein | |||
| 2 | M | M.HpyKH13ORFVP (98% identity) | ATTAAT | M.HpyKH1ORFYP |
| 3 | modification methylase VspI domain protein | |||
| 6 | 108 aa hypothetical protein | |||
| 7 | M | M.HpyKH41ORFA1P (98% identity) | M.HpyKH1ORFZP | |
| 8 | R | HpyKH41ORFA1P (100% identity) | HpyKH1ORFZP | |
| 10 | DNA cytosine methyltransferase | |||
| 10 | penicillin-binding protein 2 | |||
| 11 | M | M.HpyIS9ORF7245P (99% identity) | M.HpyKH1ORFDP | |
| 12 | 366 aa hypothetical protein | |||
| 8 | GIY-YIG nuclease family protein | |||
| 10 | M | M.HpySWT06ORF2470P (98% identity) | M.HpyKH1ORFA1P | |
| 11 | catalase | |||
| 13 | S41 family peptidase | |||
| 14 | R | HpyKH18ORFVP (97% identity) | GANTC | HpyKH1ORFVP |
| 15 | M | M.HpyKH33ORFSP (100% identity) | GANTC | M.HpyKH1ORFVP |
| 16 | adenine specific DNA methyltransferase 2 domain protein | |||
| 15 | DNA methyltransferase | |||
| ??? | RM | HpySW08ORF475P (76% identity) | HpyKH1ORFWP | |
| 21 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 19 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 20 | R | HpyH007IIP (96% identity) | GTNNAC | HpyKH1ORFHP |
| 21 | M | M.HpyKH38ORFBP (98% identity) | GTNNAC | M.HpyKH1ORFHP |
| 23 | ATP-dependent helicase | |||
| 15 | DNA topoisomerase subunit B | |||
| ??? | M | M.HpyUM037XI (100% identity) | GTAC | M.HpyKH1ORFQP |
| 19 | R | HpyKH23ORFRP (98% identity) | GTAC | HpyKH1ORFQP |
| 20 | metalloendopeptidase like protein | |||
| 17 | 177 aa hypothetical protein HMPREF1397_00627 | |||
| 18 | M | M.HpyI016ORF5240P (99% identity) | TCNNGA | M.HpyKH1ORFIP |
| 19 | R | HpyU120ORF1220P (98% identity) | TCNNGA | HpyKH1ORFIP |
| 20 | Laminin subunit alpha-2 precursor | |||
| 14 | alpha-1,2-fucosyltransferase | |||
| 16 | M | M.HpySP704VII (98% identity) | GATC | M.HpyKH1ORFBP |
| 18 | 333 aa hypothetical protein | |||
| 44 | cytochrome c1 | |||
| ??? | R | HpyU008XIP (99% identity) | TGCA | HpyKH1ORFPP |
| 48 | M | M.HpySWT12II (98% identity) | TGCA | M.HpyKH1ORFPP |
| 49 | 68 aa hypothetical protein | |||
| 55 | 59 aa hypothetical protein | |||
| 56 | M | M.HpyKH41ORFEP (98% identity) | CATG | M.HpyKH1ORFFP |
| 57 | HAD family hydrolase | |||
| 57 | outer membrane protein | |||
| 60 | RM | HpyKH18ORFPP (88% identity) | HpyKH1ORFGP | |
| 62 | -binding protein | |||
| 81 | sodium/proline symporter | |||
| ??? | R | HpyKH18ORFMP (85% identity) | CCTC | HpyKH1ORFRP |
| 84 | DNA methyltransferase | |||
| 85 | M | M2.HpyKH18ORFMP (99% identity) | CCTC | M2.HpyKH1ORFRP |
| 87 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 94 | 943 aa hypothetical protein | |||
| 96 | RM | HpyBG1XVII (91% identity) | HpyKH1ORFOP | |
| 98 | 176 aa hypothetical protein | |||
| 113 | 66 aa hypothetical protein | |||
| ??? | R | HpyQ35ORFUP (97% identity) | TCNGA | HpyKH1ORFSP |
| 116 | M | M.HpyQ35ORFUP (98% identity) | TCNGA | M.HpyKH1ORFSP |
| 117 | 71 aa hypothetical protein | |||
| 158 | 114 aa hypothetical protein | |||
| 159 | M | M.HpyBS272ORF2285P (99% identity) | CTNAG | M.HpyKH1ORFAP |
| 160 | R | Hpy14039ORFIP (98% identity) | CTNAG | HpyKH1ORFAP |
| 161 | 3QBU_A Chain A, Crystal Structure Of Putative Peptidoglycan Deactelyase From Helicobacter Pylori | |||
| 162 | ComF family protein | |||
| 164 | RM | HpyKH28ORFRP (100% identity) | HpyKH1ORFMP | |
| 165 | S | S.HpyPO102ORF7085P (92% identity) | S.HpyKH1ORFMP | |
| 166 | DNA polymerase I | |||
| 233 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| 234 | M | M.HpyBG6XIII (94% identity) | M.HpyKH1ORFCP | |
| 235 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 231 | chaperone protein ClpB | |||
| ??? | M | M.Hpy417ORF1330P (98% identity) | M.HpyKH1ORFJP | |
| 238 | R | Hpy20AORFHP (84% identity) | HpyKH1ORFJP | |
| 239 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 239 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 241 | M | M.HpySP20XVI (98% identity) | TCGA | M.HpyKH1ORFKP |
| 242 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 32 | DNA-binding response regulator | |||
| ??? | M | M.HpyC66ORFEP (94% identity) | M.HpyKH1ORFUP | |
| 35 | R | HpySP705ORF390P (90% identity) | HpyKH1ORFUP | |
| 37 | rod shape-determining MreC family protein | |||
| 53 | DNA/RNA non-specific endonuclease | |||
| 54 | M | M.HpyNP10ORF6710P (93% identity) | M.HpyKH1ORFTP | |
| 55 | R | HpyNP13ORF6650P (90% identity) | HpyKH1ORFTP | |
| 56 | biotin synthase | |||
| 89 | ATP-dependent DNA helicase | |||
| ??? | M | M.HpyKH37ORFQP (94% identity) | M.HpyKH1ORFNP | |
| 94 | R | HpyKH44ORFQP (92% identity) | HpyKH1ORFNP | |
| 96 | type II S restriction-modification protein | |||