Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 |
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Putative Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Complete sequence: 1,680,937 bp
GenBank #: LS483488
REBASE acronym: HpyC11637
Org_num: 29645
All begin NCTC11637_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1014 | outer membrane protein | |||
| 1015 | S | S.HpyS298ORF860P (100% identity) | S.HpyC11637ORF1015P | |
| 1016 | heavy-metal cation-transporting P-type | |||
| 1071 | hydroxyethylthiazole kinase | |||
| 1072 | R | HpyS298ORF1160P (100% identity) | HpyC11637ORF1074P | |
| 1073 | S | S.HpyS298ORF1160P (100% identity) | S.HpyC11637ORF1074P | |
| 1074 | M | M.HpyS298ORF1160P (100% identity) | M.HpyC11637ORF1074P | |
| 1075 | phosphatidic acid phosphatase | |||
| 1346 | Uncharacterized protein conserved in bacteria | |||
| ??? | R | HpyS298ORF2550P (100% identity) | HpyC11637ORF1349P | |
| 1349 | M | M.HpyS298ORF2550P (100% identity) | M.HpyC11637ORF1349P | |
| 1350 | S | S.HpyS298ORF2550P (100% identity) | S.HpyC11637ORF1349P | |
| 1352 | polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10 | type III restriction enzyme | |||
| 11 | RM | HpyS298ORF4175P (100% identity) | HpyC11637ORF11P | |
| 12 | Uncharacterized phage-associated protein | |||
| 28 | outer membrane protein (omp32) | |||
| ??? | R | HpyS298VIIP (100% identity) | CCATC | HpyC11637IVP |
| 31 | M | M2.HpyS298VII (100% identity) | CCATC | M2.HpyC11637IV |
| 32 | M | M1.HpyS298VII (100% identity) | CCATC | M1.HpyC11637IV |
| 33 | Permease | |||
| 58 | HP1473-transformation associated protein | |||
| 59 | RM | HpyS298ORF4410P (100% identity) | HpyC11637ORF59P | |
| 60 | S | S.HpyS298ORF4410P (100% identity) | S.HpyC11637ORF59P | |
| 61 | DNA polymerase I | |||
| 248 | Agmatine deiminase | |||
| 249 | M | M1.HpyS298VIII (100% identity) | CCTC | M1.HpyC11637V |
| 250 | M | M2.HpyS298VIIIP (100% identity) | CCTC | M2.HpyC11637VP |
| 251 | R | HpyS298VIIIP (100% identity) | CCTC | HpyC11637VP |
| 252 | type II DNA modification enzyme | |||
| 251 | restriction endonuclease | |||
| 252 | M | M.HpyKH4ORFTP (100% identity) | GTSAC | M.HpyC11637ORF252P |
| ??? | R | Hpy43504ORF245P (100% identity) | GTSAC | HpyC11637ORF252P |
| 254 | adenine/cytosine DNA methyltransferase | |||
| 297 | HrgA protein | |||
| 298 | M | M.HpyS298III (100% identity) | GATC | M.HpyC11637VII |
| 299 | alpha-1,2-fucosyltransferase | |||
| 382 | elongation factor P | |||
| 383 | M | M.HpyS298ORF6065P (100% identity) | M.HpyC11637ORF383P | |
| 384 | Uncharacterised protein | |||
| 385 | 5-methylcytosine-specific restriction enzyme B | |||
| 386 | R | R2.HpyS298ORF6065P (100% identity) | HpyC11637ORF383P | |
| 387 | pseudaminic acid synthase | |||
| 601 | IceA2 protein | |||
| 602 | M | M.HpyS298I (100% identity) | CATG | M.HpyC11637I |
| 603 | haloacid dehalogenase/epoxide hydrolase | |||
| 696 | negative regulator of flagellin synthesis FlgM | |||
| 697 | M | M.Hpy43504ORF677P (100% identity) | GCGC | M.HpyC11637ORF697P |
| 698 | Uncharacterised protein | |||
| 715 | DNA polymerase III subunit beta | |||
| 717 | M | M.HpyS298ORF7760P (100% identity) | GTAC | M.HpyC11637VIII |
| 718 | R | HpyS298ORF7760P (100% identity) | GTAC | HpyC11637VIIIP |
| 720 | metalloendopeptidase like protein | |||
| 891 | anaerobic glycerol-3-phosphate | |||
| ??? | RM | HpyS298ORF250P (100% identity) | HpyC11637ORF892P | |
| 894 | Uncharacterised protein | |||
| 1133 | flagellar hook protein FlgE | |||
| 1134 | R | HpyS298IVP (100% identity) | GTNNAC | HpyC11637IXP |
| 1135 | M | M.HpyS298IV (100% identity) | GTNNAC | M.HpyC11637IX |
| 1136 | ATP-dependent DNA helicase | |||
| 1284 | methyltransferase | |||
| 1285 | M | type II DNA modification enzyme | M.HpyC11637ORF1285AP | |
| 1286 | ISHa1675 transposase B | |||
| 1287 | transposase | |||
| 1288 | M | type II DNA modification enzyme | M.HpyC11637ORF1285BP | |
| ??? | R | HpyS298ORF2235P (100% identity) | HpyC11637ORF1285P | |
| 1291 | Laminin subunit alpha-2 precursor | |||
| 1326 | Catalase like protein | |||
| ??? | R | HpyS298ORF2445P (100% identity) | ACGT | HpyC11637ORF1328P |
| 1328 | M | M.HpyS298ORF2445P (100% identity) | M.HpyC11637ORF1328P | |
| 1329 | type II restriction endonuclease | |||
| 1328 | type II DNA modification enzyme | |||
| 1329 | R | HpyS298IIP (100% identity) | ACNGT | HpyC11637IIIP |
| 1330 | M | M.HpyS298II (100% identity) | ACNGT | M.HpyC11637III |
| 1331 | GTP-binding protein | |||
| 1332 | DD-heptosyltransferase | |||
| 1333 | M | M.HpyS298V (100% identity) | ATTAAT | M.HpyC11637II |
| 1334 | outer membrane protein HopK | |||
| 1477 | Uncharacterised protein | |||
| 1478 | M | M.HpyS298VI (100% identity) | CTNAG | M.HpyC11637VI |
| 1479 | R | HpySW33VP (100% identity) | CTNAG | HpyC11637VIP |
| 1480 | polysaccharide deacetylase | |||
| 1527 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 1528 | M | M.HpyS298ORF3450P (100% identity) | CCGG | M.HpyC11637ORF1528P |
| ??? | R | HpyS298ORF3450P (100% identity) | CCGG | HpyC11637ORF1528P |
| 1531 | Uncharacterised protein | |||
| 1532 | Uncharacterised protein | |||
| 1533 | M | M.HpyS298IX (100% identity) | TCGA | M.HpyC11637X |
| 1534 | exodeoxyribonuclease VII large subunit | |||
| 1576 | carboxyl-terminal protease | |||
| ??? | RM | HpyS298ORF3680P (99% identity) | HpyC11637ORF1577P | |
| 1579 | nicotinate-nucleotide pyrophosphorylase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7 | ATP-dependent DNA helicase | |||
| ??? | M | M.Hpy49503ORF80P (97% identity) | M.HpyC11637ORF8P | |
| 10 | R | HpyS298ORF4160P (100% identity) | HpyC11637ORF8P | |
| 11 | type IIS restriction-modification protein | |||
| 1589 | two-component regulator | |||
| ??? | M | M.HpyBGR8ORF6415P (94% identity) | M.HpyC11637ORF1590P | |
| 1592 | R | HpyS298ORF3740P (100% identity) | HpyC11637ORF1590P | |
| 1593 | rod shape-determining MreC family protein | |||
| 1603 | endonuclease | |||
| ??? | M | M.HpyS298ORF3805P (100% identity) | M.HpyC11637ORF1604P | |
| 1606 | R | HpyS298ORF3805P (96% identity) | HpyC11637ORF1604P | |
| 1607 | biotin synthase | |||