Putative Rhodococcus coprophilus NCTC10994 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Complete sequence: 4,579,834 bp
GenBank #: LS483468
REBASE acronym: Rco10994
Org_num: 29578
All begin NCTC10994_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
310 | Uncharacterised protein | |||
311 | R | RspM835ORF20P (91% identity) | Rco10994ORF313P | |
??? | S | S.Ksp09ORF18750P (52% identity) | S.Rco10994ORF313P | |
313 | M | M.RruP25ORFHP (41% identity) | M.Rco10994ORF313BP | |
314 | type III restriction-modification system StyLTI | |||
315 | methyltransferase | |||
316 | Uncharacterised protein | |||
317 | helicase and type iii restriction enzyme | |||
318 | DNA binding domain, excisionase family | |||
319 | Uncharacterised protein | |||
320 | Uncharacterised protein | |||
321 | Uncharacterised protein | |||
322 | site-specific tyrosine recombinase XerC | |||
323 | M | type I restriction-modification system | M.Rco10994ORF313AP | |
324 | Uncharacterised protein | |||
1928 | BCCT family transporter | |||
1929 | R | RspZ13ORF19310P (86% identity) | Rco10994ORF1938P | |
1930 | Uncharacterised protein | |||
1931 | Telomeric repeat-binding factor 2 | |||
1932 | Uncharacterised protein | |||
1933 | lipoprotein | |||
1934 | Predicted nucleotidyltransferases | |||
1935 | Uncharacterised protein | |||
1936 | Uncharacterised protein | |||
1937 | S | S.RspDMF1ORF17940P (40% identity) | S.Rco10994ORF1938P | |
??? | M | M.RspP14ORFCP (43% identity) | M.Rco10994ORF1938P | |
1940 | ribonuclease H | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1300 | Helicase conserved C-terminal domain | |||
1301 | RM | Ama11373ORF791P (37% identity) | Rco10994ORF1301P | |
1302 | helicase and type iii restriction enzyme | |||
1317 | Uncharacterised protein | |||
??? | M | M2.RgoDND3ORF6700P (87% identity) | M1.Rco10994ORF1318P | |
1320 | M | M.RrhKG21ORFAP (84% identity) | M2.Rco10994ORF1318P | |
1321 | Uncharacterised protein | |||
2413 | pseudogene | |||
2414 | M | M.RspRDE2ORF2500P (88% identity) | M.Rco10994ORF2414P | |
2415 | V | V.RspPD04ORF1350P (67% identity) | V.Rco10994ORF2414P | |
2416 | Uncharacterised protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
313 | type I restriction-modification system | |||
314 | R | Rsp12038ORF16790P (94% identity) | Rco10994ORF315P | |
315 | M | M.MvaJOB5ORF11520P (80% identity) | M.Rco10994ORF315P | |
316 | Uncharacterised protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
1302 | helicase and type iii restriction enzyme | |||
1303 | R | Rpy44McrC3P (77% identity) | Rco10994McrCP | |
1304 | R | RgoDND3McrBP (84% identity) | Rco10994McrBP | |
1305 | Uncharacterised protein |