Salmonella enterica subsp. enterica serovar Senftenberg NCTC10080 |
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Putative Salmonella enterica subsp. enterica serovar Senftenberg NCTC10080 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Complete sequence: 5,029,670 bp
GenBank #: LS483465
REBASE acronym: Sen10080
Org_num: 29606
All begin NCTC10080_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | hypothetical protein | |||
| 4164 | M | M.Sen8400ORF16660P (100% identity) | CCGANNNNNGTC | M.Sen10080I |
| 4165 | S | S.Sen8400ORF16660P (100% identity) | CCGANNNNNGTC | S.Sen10080I |
| 4166 | R | Sen8400ORF16660P (100% identity) | CCGANNNNNGTC | Sen10080IP |
| 4167 | transporter | |||
| 4212 | TIR protein | |||
| 4213 | R | Sen8400ORF16910P (100% identity) | AAGNNNNNCTTC | Sen10080IIP |
| 4214 | M | M.Sen8400ORF16910P (100% identity) | AAGNNNNNCTTC | M.Sen10080II |
| 4215 | S | S.Sen8400ORF16910P (98% identity) | AAGNNNNNCTTC | S.Sen10080II |
| 4216 | recombination protein F | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 362 | DamX protein | |||
| 363 | M | DNA adenine methylase | GATC | M.Sen10080DamP |
| 364 | ribulose-phosphate 3-epimerase | |||
| 461 | protein yhdU | |||
| 462 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen10080IV |
| 463 | Fis DNA-binding protein | |||
| 988 | Uncharacterised protein | |||
| 989 | M | M.Ero1505ORF16265P (100% identity) | M.Sen10080ORF989P | |
| 990 | Uncharacterised protein | |||
| 1269 | transposase IS66 | |||
| 1270 | RM | Sma1978ORFHP (100% identity) | CTTGAC | Sen10080V |
| 1271 | Uncharacterised protein | |||
| 2101 | prophage protein | |||
| 2102 | M | M.SenSH7ORF6615P (100% identity) | M.Sen10080ORF2102P | |
| 2103 | 243 aa conserved hypothetical bacteriophage protein | |||
| 2114 | phage protein | |||
| 2115 | M | M.SenS16ORF9325P (100% identity) | M.Sen10080ORF2115P | |
| 2116 | crossover junction endodeoxyribonuclease | |||
| 2940 | inner membrane transporter yedA | |||
| 2941 | V | patch repair protein | V.Sen10080DcmP | |
| 2942 | M | M.SspZ69DcmP (100% identity) | CCWGG | M.Sen10080DcmP |
| 2943 | metal-dependent phospho hydrolase | |||
| 3073 | Integration, recombination (Phage or Prophage) | |||
| 3074 | M | M.SenM4441ORF12220P (99% identity) | GATC | M.Sen10080ORF3074P |
| 3075 | bacteriophage protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1304 | DNA methyltransferase | |||
| 1305 | R | Sen80013ORF11280P (100% identity) | Sen10080ORF1304P | |
| 1306 | transposase | |||
| 3680 | cytoplasmic protein | |||
| 3681 | R | Sen8400ORF14200P (100% identity) | CAGAG | Sen10080IIIP |
| 3682 | M | M.Sen8400ORF14200P (100% identity) | CAGAG | M.Sen10080III |
| 3683 | metabolite transport protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4160 | Uncharacterised protein | |||
| ??? | R | Sen8400MrrP (100% identity) | Sen10080MrrP | |
| 4164 | DNA methyltransferase | |||