Escherichia coli H17 |
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Putative Escherichia coli H17 RM systems
Ref: Zhao,D. unpublished
REBASE ref # 26070
| Sequence length: | GenBank #: | |
| Chromosome: | 5,219,546 bp | CP021193 |
| plasmid pH17-2: | 107,793 bp | CP021195 |
| plasmid pH17-3: | 252,257 bp | CP021196 |
| plasmid pH17-4: | 99,593 bp | CP021197 |
| plasmid pH17-5: | 157,585 bp | CP021198 |
REBASE acronym: EcoH17
Org_num: 29402
All begin B9T59_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8790 | restriction endonuclease | |||
| 8795 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | EcoH17ORF8800P |
| 8800 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.EcoH17ORF8800P |
| 8805 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.EcoH17ORF8800P |
| 8810 | 113 aa hypothetical protein | |||
| 10400 | 540 aa hypothetical protein | |||
| 10405 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoH17ORF10410P |
| 10410 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoH17ORF10410P |
| 10415 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoH17ORF10410P |
| 10420 | 0 aa hypothetical protein | |||
| 18230 | 112 aa hypothetical protein | |||
| 18235 | R | EcoXH992ORF9180P (99% identity) | CACNNNNNRTAT | EcoH17ORF18245P |
| 18240 | S | S.EcoXH992ORF9180P (100% identity) | CACNNNNNRTAT | S.EcoH17ORF18245P |
| 18245 | M | M.EcoXH992ORF9180P (100% identity) | CACNNNNNRTAT | M.EcoH17ORF18245P |
| 18250 | 621 aa hypothetical protein | |||
| 24075 | IS1 family transposase | |||
| 24080 | M | M.EcosEC21ORF13545P (100% identity) | M.EcoH17ORF24080P | |
| 24085 | 50S ribosome-binding GTPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1910 | drug/metabolite exporter YedA | |||
| 1915 | V | V.SsoSE61DcmP (100% identity) | V.EcoH17DcmP | |
| 1920 | M | M.SflWW1DcmP (100% identity) | CCWGG | M.EcoH17DcmP |
| 1925 | phosphohydrolase | |||
| 15290 | cell division protein DamX | |||
| 15295 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoH17DamP |
| 15300 | ribulose-phosphate 3-epimerase | |||
| 15860 | transporter | |||
| 15865 | M | M.Ecost20ORFAP (100% identity) | ATGCAT | M.EcoH17ORF15865P |
| 15870 | Fis family transcriptional regulator | |||
| 18055 | superoxide dismutase | |||
| 18060 | R | SenS530DptFP (100% identity) | EcoH17DptFP | |
| 18065 | DNA phosphorothioation-dependent restriction | |||
| 18060 | DNA phosphorothioation-dependent restriction | |||
| 18065 | R | SenI222DptGP (100% identity) | EcoH17DptGP | |
| 18070 | DNA phosphorothioation-dependent restriction | |||
| 18065 | DNA phosphorothioation-dependent restriction | |||
| 18070 | R | SenS530DptHP (100% identity) | EcoH17DptHP | |
| 18075 | 396 aa hypothetical protein | |||
| 18085 | 0 aa hypothetical protein | |||
| 18090 | M | M.SenS530DndEP (100% identity) | M.EcoH17DndEP | |
| 18095 | DNA sulfur modification protein DndD | |||
| 18090 | DNA sulfur modification protein DndE | |||
| 18095 | M | M.EcoB8S18DndDP (22% identity) | M.EcoH17DndDP | |
| 18100 | IS5/IS1182 family transposase | |||
| 18100 | IS5/IS1182 family transposase | |||
| 18105 | M | M.EcoB8S18DndDP (78% identity) | M.EcoH17DndD2P | |
| 18110 | 544 aa hypothetical protein | |||
| 18105 | DNA sulfur modification protein DndD | |||
| 18110 | M | M.SenS530DndCP (100% identity) | M.EcoH17DndCP | |
| 18115 | DNA sulfur modification protein DndB | |||
| 18110 | 544 aa hypothetical protein | |||
| 18115 | M | M.SenS530DndBP (99% identity) | M.EcoH17DndBP | |
| 18120 | DNA-binding protein | |||
| 20430 | 75 aa hypothetical protein | |||
| 20435 | M | M.EcoXH992ORF11580P (100% identity) | M.EcoH17ORF20435P | |
| 20440 | endonuclease | |||
| plasmid pH17-2 | ||||
| 27455 | 62 aa hypothetical protein | |||
| 27460 | M | M.SmaKC004ORF48960P (100% identity) | M.EcoH17ORF27460P | |
| 27465 | 297 aa hypothetical protein | |||
| 27745 | 0 aa hypothetical protein | |||
| 27750 | M | M.SmaQC11ORF52800P (100% identity) | M.EcoH17ORF27750P | |
| 27755 | 73 aa hypothetical protein | |||
| plasmid pH17-3 | ||||
| 28185 | 284 aa hypothetical protein | |||
| 28190 | M | M.YpsF1ORFDP (100% identity) | M.EcoH17ORF28190P | |
| 28195 | DNA-binding protein | |||
| 28295 | 202 aa hypothetical protein | |||
| 28300 | M | M.YpsF1ORFBP (100% identity) | M.EcoH17ORF28300P | |
| 28305 | 108 aa hypothetical protein | |||
| 29095 | nuclease | |||
| 29100 | M | M.YpsF1ORFCP (100% identity) | M.EcoH17ORF29100P | |
| 29105 | 439 aa hypothetical protein | |||
| plasmid pH17-4 | ||||
| 29675 | 73 aa hypothetical protein | |||
| 29680 | M | M.SflN101ORF24625P (100% identity) | M.EcoH17ORF29680P | |
| 29685 | 0 aa hypothetical protein | |||
| plasmid pH17-5 | ||||
| 30400 | 73 aa hypothetical protein | |||
| 30405 | M | M.Eco2BGRORF25360P (100% identity) | M.EcoH17ORF30405P | |
| 30410 | 59 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8785 | GTPase | |||
| 8790 | R | Ssp28760MrrP (100% identity) | EcoH17MrrP | |
| 8795 | type I restriction-modification system | |||
| 8810 | 113 aa hypothetical protein | |||
| 8815 | R | SenHNK130McrBP (100% identity) | EcoH17McrBP | |
| 8820 | R | SenHNK130McrCP (100% identity) | EcoH17McrCP | |