Escherichia coli E41-1 |
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Putative Escherichia coli E41-1 RM systems
Ref: Wu,Q. unpublished
REBASE ref # 26754
| Sequence length: | GenBank #: | |
| Chromosome: | 5,022,609 bp | CP028483 |
| plasmid p1: | 128,911 bp | CP028484 |
| plasmid p2: | 86,657 bp | CP028485 |
| plasmid p3: | 52,864 bp | CP028486 |
REBASE acronym: EcoE411
Org_num: 29401
All begin C2U19_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20040 | 267 aa hypothetical protein | |||
| 20045 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoE411ORF20050P |
| 20050 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoE411ORF20050P |
| 20055 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoE411ORF20050P |
| 20060 | 61 aa hypothetical protein | |||
| 21930 | restriction endonuclease | |||
| 21935 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoE411ORF21935P |
| 21940 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoE411ORF21935P |
| 21945 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoE411ORF21935P |
| 21950 | endoribonuclease SymE | |||
| plasmid p1 | ||||
| 26645 | type II toxin-antitoxin system | |||
| 26650 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoE411ORF26650P |
| 26655 | S | S.SenceORFJP (100% identity) | CAAYNNNNNCTGG | S.EcoE411ORF26650P |
| 26660 | R | KpnKPH1ORF27575P (42% identity) | CAAYNNNNNCTGG | EcoE411ORF26650P |
| 26665 | glycosyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1790 | cell division protein DamX | |||
| 1795 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoE411DamP |
| 1800 | ribulose-phosphate 3-epimerase | |||
| 2420 | DUF2556 domain-containing protein | |||
| 2425 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoE411ORF2425P |
| 2430 | Fis family transcriptional regulator | |||
| 10155 | phosphohydrolase | |||
| 10160 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoE411DcmP |
| 10165 | V | V.SflC32DcmP (74% identity) | V.EcoE411DcmP | |
| 10170 | drug/metabolite exporter YedA | |||
| 13910 | 108 aa hypothetical protein | |||
| 13925 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoE411ORF13925P |
| 13930 | TrmB family transcriptional regulator | |||
| 16320 | XRE family transcriptional regulator | |||
| 16325 | M | M.KpnYN1ORFGP (89% identity) | M.EcoE411ORF16325P | |
| 16330 | 71 aa hypothetical protein | |||
| 22330 | restriction endonuclease | |||
| 22335 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoE411ORF22340P |
| 22340 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoE411ORF22340P |
| 22345 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoE411ORF22340P |
| 22350 | IS3 family transposase | |||
| plasmid p1 | ||||
| 26745 | 0 aa hypothetical protein | |||
| 26750 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoE411ORF26750P |
| 26755 | 73 aa hypothetical protein | |||
| plasmid p2 | ||||
| 27200 | 0 aa hypothetical protein | |||
| 27205 | M | M.SflC32ORFDP (100% identity) | SAY | M.EcoE411ORF27205P |
| 27210 | 73 aa hypothetical protein | |||
| plasmid p3 | ||||
| 27630 | IS1 family transposase | |||
| 27635 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoE411ORF27635P |
| 27640 | R | YpsR1ORFAP (99% identity) | CCWGG | EcoE411ORF27635P |
| 27645 | resolvase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22310 | 60 aa hypothetical protein | |||
| 22315 | R | EcosS3McrBP (71% identity) | EcoE411McrBAP | |
| 22320 | IS3-like element ISEc52 family transposase | |||
| 22325 | R | EcosS9McrBP (37% identity) | EcoE411McrBBP | |
| 22330 | R | EcosS9McrCP (100% identity) | EcoE411McrCP | |
| 22335 | Alw26I/Eco31I/Esp3I family type II restriction | |||